RNA id: TU1803624


Basic Information

Item Value
RNA id TU1803624
length 1583
lncRNA type read_through
GC content 0.45
exon number 3
gene id G1576309
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67531804 ~ 67627606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACATTTATTTACCATTTGTCAACTTTACAATAAAACCATAACATCTGTCAACATTAGCAAAATAAAGAACAGTATCAGTCCCAATGTATTTACAGAGACATTAAAGTAGAGTCAGGCTTACACACACCAGACAGATGAACAATTTCTTGCTTCCTTTTAAAACTGCAACACTGAACATGTCAAACTCaagcgtgttttttttttttttttttaccccactAAGATAAAAAATCTAAAGTTGCTCCTTATGTTTCttctttaaaaacaaaacaaaacaacagcTTCTCTGAATCTTTAAAATGGTTCTCTAAAAGGTACACCACAAAATACTTCAAATTTGGGGTGAAAATATAGGAATGTAGAAAGTTGGCAAGTCTCTTTTTTTTCCTCCTCAAATTTCTGATTTCTTGTTCTTGTTGTTTTTCTAAAAATGGGATGAATAGTCATTTCATGTGGTGGTTGGGTTGGTGTCCTGTCCTATCCAGTTCATTCCTACACGTGGACGCGTCTTTTTGTTGAGTCGGGTGTTTTTAGGGAAAAGACGGGTCAACTCGACTCCCATCCATAACCGTGTTCCACTTTGCGGTCCAATAAATCCCATTGTTCCCATAGCAACCAGCACATAATACCACCAGGTTTGACCCTGTCTCGCCGTAACCAGGGAAGTGAACTAGTACCATGACAAAAGTGACACATTTGGAGTCTCAcataaatgtgtatatatttacatatacatatatccatacatatgtatacatatagacatatatatagaaatatatatttataactattttctctctctctctctcttgaaaaACAGTTCACACAGTCCTTTGTTGTGGGTAAAGATACAATCACTCTGCATTCTGTTGGGAGGGGGCTACTGCCGCGGGGGTCGAGCTGGCCTCCTCTGTTGGTTTGGTGGGCTCTGGGGCAGGTGCAGCCGcctcctttacctcctcctccttaGGTGCCTCCTCTGCTTTAGCCTGCGCCTCGTCGGCCTTAGGGGCTTCTGCAGTAGCCGTCAcaacctcttcctcctctgctttCTTCTCCTCCGTAGCCACAGCGGCTCCGTTCTCTGCAGGTTTCTCCTCAGCGGAAGCGgccgcctcctcctccttcacctcctccttcTTGGTCTTCTTCAGTTTCAGGCCCTTGAAGTTGAAAGATTTCTTCAGGAAgaaattcttcttcttcttggagATATCCTTGGCAGCGGCCTCACCTTCCTGTTTGGCGGCCTCGCCATCGGGCGCTGGCTCGATGGCGTCCCCTCCAGCACCCGCTTCAGGCTCCTTGGCGTCGGCAGAACCATTTGGAGCGGCCGTGTCTGTGGCATCACCATTGGACTTGACATGACCGTTCTCCTGTCCATTCGGTTTGACGGTGGCGGCATCCGCAGCATTCGCCTCCACAGCTACCCCTCCCTTGGACGCTTGGGAACCCATCGTTATTCGGTGTTTATCAAAGAGAATTAAACCAACAACAAAATGTTTGTCTCAATTTAATCCAGCTCCCGGGCAGTAGTATGGATCCAATgacaaaatgtgattttttttttgtgtggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803620 lncRNA downstream 883 67530532 ~ 67530921 (-) True G1576308
TU1803612 lncRNA downstream 17974 67513615 ~ 67513830 (-) True G1576301
TU1803611 lncRNA downstream 20399 67511189 ~ 67511405 (-) True G1576300
TU1803607 lncRNA downstream 26509 67505078 ~ 67505295 (-) True G1576296
TU1803606 lncRNA downstream 26778 67504678 ~ 67505026 (-) True G1576295
TU1803692 lncRNA upstream 62433 67690039 ~ 67693497 (-) False G1576359
TU1803696 lncRNA upstream 62433 67690039 ~ 67693497 (-) False G1576359
TU1803694 lncRNA upstream 63324 67690930 ~ 67693497 (-) False G1576359
TU1803693 lncRNA upstream 65020 67692626 ~ 67698921 (-) False G1576359
TU1803695 lncRNA upstream 67273 67694879 ~ 67699105 (-) True G1576359
XM_036953587.1 mRNA downstream 90437 67407312 ~ 67441367 (-) True fndc5b
XM_021572767.2 mRNA downstream 182820 67341388 ~ 67348984 (-) True srfbp1
XM_036953582.1 mRNA downstream 194608 67325870 ~ 67337196 (-) False LOC110496729
XM_036953583.1 mRNA downstream 194608 67325870 ~ 67337196 (-) True LOC110496729
XM_021572761.2 mRNA downstream 419221 67108578 ~ 67112583 (-) False sox4a
XM_021572773.2 mRNA upstream 34519 67662125 ~ 67668116 (-) True eif3i
XM_036953589.1 mRNA upstream 42482 67670088 ~ 67684247 (-) False txlna
XM_036953590.1 mRNA upstream 42482 67670088 ~ 67684423 (-) True txlna
XR_005037542.1 mRNA upstream 71570 67699176 ~ 67702000 (-) False LOC118941210
XM_036953591.1 mRNA upstream 74935 67702541 ~ 67723231 (-) False kpna6
TU1803506 other downstream 89828 67401448 ~ 67441976 (-) False G1576222
TU1803513 other downstream 89828 67401448 ~ 67441976 (-) False G1576222
TU1803517 other downstream 89828 67401448 ~ 67441976 (-) True G1576222
TU1803205 other downstream 328317 67203201 ~ 67203487 (-) True G1575977
TU1803115 other downstream 473131 67058177 ~ 67058673 (-) True LOC118941008
TU1803844 other upstream 287582 67915188 ~ 67955212 (-) True G1576491
TU1804691 other upstream 994642 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 1121006 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 1685280 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 1685280 69312886 ~ 69315007 (-) False G1577996

Expression Profile