RNA id: TU1803844


Basic Information

Item Value
RNA id TU1803844
length 357
RNA type TUCP
GC content 0.59
exon number 2
gene id G1576491
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67915188 ~ 67955212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGTAGTTTgaggagacaaggaacagctgggggaaagcgggggagaaaaggtaacctaatacgaccagcagagggagacagggtgaagggaaaggacagagacaagacacaacatgacagtacatgacagtacccccccactcaccgagcgcctcctggcgcactcgaggaggaaacctggcggcaacggaggaaatcctcgatcagcgcacggtccagcacgtcccgagagggaacccaactcctctcctcaggaccgtacccctcccaatctacgaggtactggtgaccacggccccgaggacgcatgtccaaaattctacggaccctgtagatgggtgcgccctcgacaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803830 lncRNA downstream 18566 67895983 ~ 67896622 (-) True G1576482
TU1803786 lncRNA downstream 35334 67879620 ~ 67879854 (-) True G1576444
TU1803784 lncRNA downstream 53501 67861473 ~ 67861687 (-) True G1576442
TU1803783 lncRNA downstream 54166 67860394 ~ 67861022 (-) True G1576441
TU1803769 lncRNA downstream 107679 67807223 ~ 67807509 (-) True G1576428
TU1803885 lncRNA upstream 4438 67959650 ~ 67959922 (-) True G1576527
TU1803898 lncRNA upstream 12384 67967596 ~ 67967822 (-) True G1576540
TU1803911 lncRNA upstream 24464 67979676 ~ 67979918 (-) True G1576553
TU1804234 lncRNA upstream 36515 67991727 ~ 68428332 (-) True G1576824
TU1804241 lncRNA upstream 52258 68007470 ~ 68007863 (-) True G1576831
trnay-gua-61 mRNA downstream 21041 67894060 ~ 67894147 (-) True trnay-gua-61
trnay-gua-60 mRNA downstream 22512 67892589 ~ 67892676 (-) True trnay-gua-60
trnay-gua-59 mRNA downstream 23984 67891117 ~ 67891204 (-) True trnay-gua-59
trnay-gua-58 mRNA downstream 25458 67889643 ~ 67889730 (-) True trnay-gua-58
trnay-gua-57 mRNA downstream 26932 67888169 ~ 67888256 (-) True trnay-gua-57
XM_036953593.1 mRNA upstream 320227 68275439 ~ 68295886 (-) True khdrbs1b
XM_036953596.1 mRNA upstream 377036 68332248 ~ 68354474 (-) False LOC110496744
XM_036953594.1 mRNA upstream 377036 68332248 ~ 68354478 (-) False LOC110496744
XM_036953598.1 mRNA upstream 377036 68332248 ~ 68354478 (-) False LOC110496744
XM_036953595.1 mRNA upstream 377036 68332248 ~ 68355140 (-) False LOC110496744
TU1803506 other downstream 473212 67401448 ~ 67441976 (-) False G1576222
TU1803513 other downstream 473212 67401448 ~ 67441976 (-) False G1576222
TU1803517 other downstream 473212 67401448 ~ 67441976 (-) True G1576222
TU1803205 other downstream 711701 67203201 ~ 67203487 (-) True G1575977
TU1803115 other downstream 856515 67058177 ~ 67058673 (-) True LOC118941008
TU1804691 other upstream 667036 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 793400 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 1357674 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 1357674 69312886 ~ 69315007 (-) False G1577996
TU1805797 other upstream 1357674 69312886 ~ 69315007 (-) True G1577996

Expression Profile