RNA id: TU1804234


Basic Information

Item Value
RNA id TU1804234
length 787
lncRNA type read_through
GC content 0.46
exon number 2
gene id G1576824
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 67991727 ~ 68428332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaccctattccctatatagtgcactactttagaccagagacctatggaaccctattccctatatagtgcattactttagaccagagcccaatggaaccctattccctatatagtgcactactttagaccagagcccaatggaaccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactgctttagaccagagccctatggaaccctgttccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgcactactttagaccagagccctatggaaccctattccctatatagtgtactactttagaccagagtcctatagagccctattccctatatagtgcactacttttgaccagggccttacGGTCCcttaggggctctggtcaaaattagtgcactatatagggaatagggtgccattttttaGACGCAGCCTGAGGCCTACAGTAAGATGGCTGCATTTCCGCCTAACCCTGGCTCCTTTCAATCCATTATCACTCAGGTCAGTGTGAGGTACAGGGCAGAAGGTttaggagaggcagggagggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1803911 lncRNA downstream 11809 67979676 ~ 67979918 (-) True G1576553
TU1803898 lncRNA downstream 23905 67967596 ~ 67967822 (-) True G1576540
TU1803885 lncRNA downstream 31805 67959650 ~ 67959922 (-) True G1576527
TU1803869 lncRNA downstream 52092 67938798 ~ 67939635 (-) True G1576511
TU1803846 lncRNA downstream 74885 67916457 ~ 67916842 (-) True G1576493
TU1804545 lncRNA upstream 75526 68503858 ~ 68504111 (-) True G1577096
TU1804550 lncRNA upstream 77228 68505560 ~ 68505774 (-) True G1577101
TU1804553 lncRNA upstream 81027 68509359 ~ 68509570 (-) True G1577104
TU1804573 lncRNA upstream 107666 68535998 ~ 68536205 (-) True G1577123
TU1804578 lncRNA upstream 109170 68537502 ~ 68537837 (-) True G1577128
trnay-gua-61 mRNA downstream 97580 67894060 ~ 67894147 (-) True trnay-gua-61
trnay-gua-60 mRNA downstream 99051 67892589 ~ 67892676 (-) True trnay-gua-60
trnay-gua-59 mRNA downstream 100523 67891117 ~ 67891204 (-) True trnay-gua-59
trnay-gua-58 mRNA downstream 101997 67889643 ~ 67889730 (-) True trnay-gua-58
trnay-gua-57 mRNA downstream 103471 67888169 ~ 67888256 (-) True trnay-gua-57
XM_036953600.1 mRNA upstream 113967 68542299 ~ 68602274 (-) False nt5c1aa
XM_036953601.1 mRNA upstream 113967 68542299 ~ 68602274 (-) True nt5c1aa
XR_005037544.1 mRNA upstream 193681 68622013 ~ 68624627 (-) False LOC118941211
XM_036953602.1 mRNA upstream 198544 68626876 ~ 68699108 (-) True hpcal4
XM_036953605.1 mRNA upstream 510273 68938605 ~ 68996503 (-) False trit1
TU1803844 other downstream 36515 67915188 ~ 67955212 (-) True G1576491
TU1803506 other downstream 549751 67401448 ~ 67441976 (-) False G1576222
TU1803513 other downstream 549751 67401448 ~ 67441976 (-) False G1576222
TU1803517 other downstream 549751 67401448 ~ 67441976 (-) True G1576222
TU1803205 other downstream 788240 67203201 ~ 67203487 (-) True G1575977
TU1804691 other upstream 193916 68622248 ~ 68626119 (-) True LOC118941211
TU1805395 other upstream 320280 68748612 ~ 68787686 (-) True G1577745
TU1805790 other upstream 884554 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 884554 69312886 ~ 69315007 (-) False G1577996
TU1805797 other upstream 884554 69312886 ~ 69315007 (-) True G1577996

Expression Profile