RNA id: TU1805585


Basic Information

Item Value
RNA id TU1805585
length 2491
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G1577882
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69134149 ~ 69142759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctagcagtctgtcataatattagagagaggatagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatggacacagtagatctagctggtctgtcataatataatagagacagtagatcaagctggtctgtcaaaatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtaggtctagctggtctgtcataatataatagagacagtagatctagctgatctgtcataatataacagagatagtagatctagctggtctgtcaaaatataattgagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctatcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctacctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagacgtagatctagctggtttgtcataatttgagacagtagatctagctggtctgtcataatataatcaagacagtagatctagctggtctgtcataatataatagacacagtagatctagctggtctgtcataatttaatagagacagtagatctagctggtctgtcataatataatatagacagtagatctagctggtctgttataatattatagagacagtagatctagctggtctgtcataatttaatagtgacagcagatctagctcgtcgttcataatataattgaaacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctttcataatataatagagacagtatatctagctggtatgttatatattataattgagacagtagatctagctggtccgtcataatataatagagacagtagatctagctggtctgttataatataatggacacagtagatctagctggtctgtcataatataatagagacgtagatctagctggtctgtcataatataatggagacagtagatctagctggtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctgttcgttcataatataattgagacagtagatctagctggtctgtcacaatataatagagagagcagatctagctggtctttcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctagctggtcagttatatactataatagagacagtagatctagctggtctgtcataatataatcgagacattagatctagctggtctgtcatattataatagagacagtagatcgagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatggagacagtagatctagctggtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctgttcgttcataatataattgagacagtagatctagctggtctgtcacaatataatagagagagcagatctagctggtctttcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctagctggtcagttatatactataatagagacagtagatctagctggtctgtcataatataatcgagacattagatctagctggtctgtcatattataatagagacagtagatcgagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaaatatgatagagacagtagatctagctggtcagttatatactataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagtagatcaagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctggctggtctgtcataatataatagagccagtagatctagctggtctgtcataatacaatagagacagtagatctagcttgtctgtcatattataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctcctTTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1805645 lncRNA downstream 4124 69129801 ~ 69130025 (-) True G1577930
TU1805648 lncRNA downstream 6559 69124005 ~ 69127590 (-) False G1577930
TU1805635 lncRNA downstream 10229 69117232 ~ 69123920 (-) True G1577924
TU1805631 lncRNA downstream 26919 69104434 ~ 69107230 (-) True G1577922
TU1805630 lncRNA downstream 29068 69104434 ~ 69105081 (-) False G1577922
TU1805591 lncRNA upstream 1300 69144059 ~ 69159516 (-) True G1577888
TU1805593 lncRNA upstream 6444 69149203 ~ 69160821 (-) True G1577890
TU1805652 lncRNA upstream 10720 69153479 ~ 69160611 (-) True G1577934
TU1805590 lncRNA upstream 11185 69153944 ~ 69183527 (-) True G1577887
TU1805597 lncRNA upstream 12910 69155669 ~ 69501969 (-) True G1577894
XM_021572916.2 mRNA downstream 123445 68997269 ~ 69010704 (-) False myclb
XM_036953605.1 mRNA downstream 137646 68938605 ~ 68996503 (-) False trit1
XM_036953606.1 mRNA downstream 137647 68938608 ~ 68996502 (-) True trit1
XM_036953602.1 mRNA downstream 435041 68626876 ~ 68699108 (-) True hpcal4
XR_005037544.1 mRNA downstream 509522 68622013 ~ 68624627 (-) False LOC118941211
XM_036953616.1 mRNA upstream 95284 69238043 ~ 69262803 (-) False spag1a
XM_036953615.1 mRNA upstream 95284 69238043 ~ 69262805 (-) False spag1a
XR_005037545.1 mRNA upstream 95284 69238043 ~ 69262805 (-) False spag1a
XM_036953617.1 mRNA upstream 95284 69238043 ~ 69262807 (-) True spag1a
XM_021572807.2 mRNA upstream 125151 69267910 ~ 69269425 (-) False LOC110496771
TU1805395 other downstream 346463 68748612 ~ 68787686 (-) True G1577745
TU1804691 other downstream 508030 68622248 ~ 68626119 (-) True LOC118941211
TU1803844 other downstream 1178937 67915188 ~ 67955212 (-) True G1576491
TU1803513 other downstream 1692173 67401448 ~ 67441976 (-) False G1576222
TU1805790 other upstream 170127 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 170127 69312886 ~ 69315007 (-) False G1577996
TU1805797 other upstream 170127 69312886 ~ 69315007 (-) True G1577996
TU1805967 other upstream 424425 69567184 ~ 69568164 (-) True G1578111
TU1805993 other upstream 461501 69604260 ~ 69606902 (-) True G1578132

Expression Profile