RNA id: TU1805590


Basic Information

Item Value
RNA id TU1805590
length 2734
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G1577887
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69153944 ~ 69183527 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattataatagagacagtagatctagctggtcagtcataatataatggacacagtagatctagctggtctgtcataatataatagagacgtagatctacctggcctgtcaaaatataatagagacagtagatctagctggtctgtcataatataatagagacaatagatctagctggtctgtcataatatattagagacagtagatatagctggtctgtcataatataatggagacagtagatctagctggtctgtcacagtataatagacacagtagatctagctggtctgtcataatattagacagtagatctagcaggtctgtcataatataatagacacagtagatctatctggtctgtcataatttaatagagacagtagatctagctggtctgttatatactataatagagacaatagatcttgctggtctgtcataatataatagagacgtagatctagctggtctgtcataatataatagagacagtagatatagctggtctgttatatactataatagagacagtagatctagctggtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagtagatctagcttgtctgtcatattataatagagacagtagatctatctggtctgtcatattataatagtgacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcaaaatataatagagacagtagatctagctggtctgtcataatataataaagccatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatatcatagagacagtagatttagctggtctgtcataatattagacaggagatctagctggtctgttatatactataatagagacagcagatctagctggtctgtcataatatcatagagacagtagatctagctggtctgtcataatatgagacagtagatctagcaggtctgtcataatataatagacacagtagatctatctggtctgtcataatttaatagagacagtagatctagctggtctgtcataatataatatagacagtagatctagctggtctgttataatattatagagacagtagatcttgctggtctgtcataatataatagagacgtagatctagctggtctgtcataatataatagagacagtagatatagctggtctgttatatactataatagagacagtagatctagctggtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagtagatctatctggtctgtcatattataatagtgacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataataaagccatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatatcatagagacagtagatttagctggtctgtcataatattagacaggagatctagctggtctgttatatactataatagagacagtagatctagatggtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagcagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcataatataatcgagacagtagatctagcttgtctgtcatattataatagagacagtagatctatctggtctgtcatattataatagtgacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataataaagccatagagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatatcatagagacagtagatttagctggtctgtcataatattagacaggagatctagctggtctattatatactataatagagacagtagatctagaatgtctgtcatactataatatagaggatagatctagctggtctgtcataatataatcgagacagtagatctagctggtctgtcatattataatagagacagtagatctagctggtctgtcatattataatagagaaagtaaatctagctggtctgtcataatatgagacagtagatctagctggtatgttatatattataatagagacagtagatctagctggtctgtcataatataatggacacagtagatctagctggtctgtcataatattatagagacgtagatctacctggtctgtcaaaatgtaatagagacagtagatgtagctggtctgtcaaaatataatagagacagtagatctagctggtctgtcataatataatcaagacagtagatctagctggtctgtcataatataatagacacagtagatctagttggtatgtcataatttaatagagacagtagatctagctggtctgtcataatataatatagacagtagatctagctggtctgttataatattatagagacagtagatctagctggtctgtcataatataatagagacatcagATTTAGCTCGTcgttcataatataattgagacagtagatctatctggtctgtcataatataatagagactgcagATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1805586 lncRNA downstream 5132 69136620 ~ 69148812 (-) True G1577883
TU1805585 lncRNA downstream 11185 69134149 ~ 69142759 (-) True G1577882
TU1805645 lncRNA downstream 23919 69129801 ~ 69130025 (-) True G1577930
TU1805648 lncRNA downstream 26354 69124005 ~ 69127590 (-) False G1577930
TU1805635 lncRNA downstream 30024 69117232 ~ 69123920 (-) True G1577924
TU1805657 lncRNA upstream 84308 69267835 ~ 69269364 (-) False LOC110496771
TU1805656 lncRNA upstream 84383 69267910 ~ 69269364 (-) True LOC110496771
TU1805692 lncRNA upstream 88719 69272246 ~ 69272769 (-) True G1577972
TU1805725 lncRNA upstream 120265 69303792 ~ 69305421 (-) False G1577988
TU1805726 lncRNA upstream 120265 69303792 ~ 69305421 (-) True G1577988
XM_021572916.2 mRNA downstream 143240 68997269 ~ 69010704 (-) False myclb
XM_036953605.1 mRNA downstream 157441 68938605 ~ 68996503 (-) False trit1
XM_036953606.1 mRNA downstream 157442 68938608 ~ 68996502 (-) True trit1
XM_036953602.1 mRNA downstream 454836 68626876 ~ 68699108 (-) True hpcal4
XR_005037544.1 mRNA downstream 529317 68622013 ~ 68624627 (-) False LOC118941211
XM_036953616.1 mRNA upstream 54516 69238043 ~ 69262803 (-) False spag1a
XM_036953615.1 mRNA upstream 54516 69238043 ~ 69262805 (-) False spag1a
XR_005037545.1 mRNA upstream 54516 69238043 ~ 69262805 (-) False spag1a
XM_036953617.1 mRNA upstream 54516 69238043 ~ 69262807 (-) True spag1a
XM_021572807.2 mRNA upstream 84383 69267910 ~ 69269425 (-) False LOC110496771
TU1805395 other downstream 366258 68748612 ~ 68787686 (-) True G1577745
TU1804691 other downstream 527825 68622248 ~ 68626119 (-) True LOC118941211
TU1803844 other downstream 1198732 67915188 ~ 67955212 (-) True G1576491
TU1803513 other downstream 1711968 67401448 ~ 67441976 (-) False G1576222
TU1805790 other upstream 129359 69312886 ~ 69315007 (-) False G1577996
TU1805792 other upstream 129359 69312886 ~ 69315007 (-) False G1577996
TU1805797 other upstream 129359 69312886 ~ 69315007 (-) True G1577996
TU1805967 other upstream 383657 69567184 ~ 69568164 (-) True G1578111
TU1805993 other upstream 420733 69604260 ~ 69606902 (-) True G1578132

Expression Profile