RNA id: TCONS_00005956


Basic Information

Item Value
RNA id TCONS_00005956
length 505
lncRNA type sense_over
GC content 0.55
exon number 2
gene id XLOC_002479
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 161660 ~ 175562 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGAGGGAGGGGGtggaggaaagagcggaagcattcagTGCTGGAAGTAAGGAGGCGCTGTCGGTGGTGAGTGAGGATCCGTGTGTATCAGAGTGTGTGTACACAGCGGCGTCTCCTCTGAGCGTGCAGATGACGGCGTCTGCAGCCGCTGAGCTCCCTCACAGTAAACTCCTGCTGTCTGCTGTCTCTGTCAAGCTGGAGGCCAGCGCTGGAGCACACCGGAGCCACtgcaggtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagagaaGCTCCAGTGGCTGATCTTTCCATCTCAGGAGCCCAACAGTTGGTTACCAcatgagagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgatgtggAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0001525 angiogenesis biological_process
GO:0060217 hemangioblast cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko05202 Transcriptional misregulation in cancer
ko05215 Prostate cancer
ko03000 Transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004643 lncRNA downstream 81061 85520 ~ 86348 (-) False XLOC_002476
TCONS_00005737 lncRNA downstream 115435 48851 ~ 51974 (-) True XLOC_002473
TCONS_00005735 lncRNA downstream 122066 38581 ~ 45343 (-) False XLOC_002472
TCONS_00005736 lncRNA downstream 122066 38709 ~ 45343 (-) True XLOC_002472
TCONS_00005954 lncRNA downstream 124566 38107 ~ 42843 (-) False XLOC_002472
TCONS_00005958 lncRNA upstream 9443 179863 ~ 180704 (-) True XLOC_002480
TCONS_00004649 lncRNA upstream 36662 207082 ~ 208586 (-) True XLOC_002481
TCONS_00005738 lncRNA upstream 137429 307849 ~ 309853 (-) True XLOC_002484
TCONS_00005739 lncRNA upstream 183673 354093 ~ 354657 (-) True XLOC_002488
TCONS_00005740 lncRNA upstream 186135 356555 ~ 358707 (-) True XLOC_002489
TCONS_00004646 mRNA downstream 31977 124995 ~ 135432 (-) True XLOC_002478
TCONS_00004645 mRNA downstream 46829 116115 ~ 120580 (-) True XLOC_002477
TCONS_00004642 mRNA downstream 58457 82303 ~ 108952 (-) False XLOC_002476
TCONS_00004644 mRNA downstream 62309 99371 ~ 105100 (-) True XLOC_002476
TCONS_00004641 mRNA downstream 73225 81897 ~ 94184 (-) False XLOC_002476
TCONS_00004648 mRNA upstream 36576 206996 ~ 210703 (-) False XLOC_002481
TCONS_00004650 mRNA upstream 66037 236457 ~ 244745 (-) True XLOC_002482
TCONS_00004651 mRNA upstream 113883 284303 ~ 298448 (-) False XLOC_002483
TCONS_00004652 mRNA upstream 113885 284305 ~ 302827 (-) False XLOC_002483
TCONS_00004653 mRNA upstream 113934 284354 ~ 300000 (-) True XLOC_002483
TCONS_00004640 other downstream 91218 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 93019 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004658 other upstream 169492 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2696300 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2698058 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3336120 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3598231 3768651 ~ 3768766 (-) True XLOC_002530

Expression Profile

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