RNA id: TU1805592


Basic Information

Item Value
RNA id TU1805592
length 605
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1577889
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69496404 ~ 69507418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atataatagagacagtagatctagccggtctgtcataatataatagagacattagatctagctggtctgtcatattataatagagacagtagatctagccggtctgtcataatataatagagacagtagatctagctggtctgtcatattataatagagacagttgatctagcttgtctgtcataacataatagagacagtagatctagccggtctgtcataatataatagagacattagatctagctggtctgtcatataaaaatagagacattagatctagctgttctgtcatattataatagaggcagtagatctagcaggtctgtcataatacaattgagacagtagatctggctgttatgtcataatataatagagaaagtagatatagctggtctgtcataatacaatcgagacagtggatctggctggtctgtcataatataatagagacagtagatctagctggtttgacataataaaatagagacagacagtagatctagctggtctgtcataatataatagagacagcagatctagctggtctgtcataatttaatagaaacagtagatctagctggtctgtcataatacagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1805577 lncRNA downstream 1835 69486998 ~ 69494569 (-) False G1577878
TU1805919 lncRNA downstream 16880 69475629 ~ 69479524 (-) False G1578081
TU1805921 lncRNA downstream 16880 69475629 ~ 69479524 (-) False G1578081
TU1805923 lncRNA downstream 16880 69475629 ~ 69479524 (-) False G1578081
TU1805927 lncRNA downstream 16880 69475629 ~ 69479524 (-) True G1578081
TU1805901 lncRNA upstream 29589 69537007 ~ 69564658 (-) True G1578067
TU1805952 lncRNA upstream 45757 69553175 ~ 69555873 (-) True G1578103
TU1805969 lncRNA upstream 62378 69569796 ~ 69573123 (-) True G1578113
TU1805971 lncRNA upstream 62878 69570296 ~ 69571341 (-) True G1578114
TU1805974 lncRNA upstream 67307 69574725 ~ 69576343 (-) True G1578117
XM_036953621.1 mRNA downstream 144054 69333614 ~ 69352350 (-) False LOC110496775
XM_021572807.2 mRNA downstream 226979 69267910 ~ 69269425 (-) False LOC110496771
XM_036953617.1 mRNA downstream 233597 69238043 ~ 69262807 (-) True spag1a
XM_036953615.1 mRNA downstream 233599 69238043 ~ 69262805 (-) False spag1a
XM_021572801.2 mRNA upstream 205629 69713047 ~ 69726728 (-) True LOC110496768
XM_021572804.2 mRNA upstream 277118 69784536 ~ 69826838 (-) False cibar1
XM_021572802.2 mRNA upstream 277118 69784536 ~ 69826840 (-) False cibar1
XM_021572805.2 mRNA upstream 277118 69784536 ~ 69826840 (-) False cibar1
XM_021572803.2 mRNA upstream 277118 69784536 ~ 69826841 (-) False cibar1
TU1805790 other downstream 181397 69312886 ~ 69315007 (-) False G1577996
TU1805792 other downstream 181397 69312886 ~ 69315007 (-) False G1577996
TU1805797 other downstream 181397 69312886 ~ 69315007 (-) True G1577996
TU1805395 other downstream 708718 68748612 ~ 68787686 (-) True G1577745
TU1804691 other downstream 870285 68622248 ~ 68626119 (-) True LOC118941211
TU1805967 other upstream 59766 69567184 ~ 69568164 (-) True G1578111
TU1805993 other upstream 96842 69604260 ~ 69606902 (-) True G1578132
TU1805962 other upstream 104085 69611503 ~ 69615183 (-) False G1578107
TU1806069 other upstream 315324 69822742 ~ 69826756 (-) True cibar1
TU1806309 other upstream 577955 70085373 ~ 70085792 (-) True G1578414

Expression Profile