RNA id: TU1805901


Basic Information

Item Value
RNA id TU1805901
length 2863
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1578067
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69537007 ~ 69564658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACAGGACCCATTCAATGGACCATCCATTAATTAACCTATTAAAACTACAGCACCAGGTGTTGACAGGACCCATTCAATGGACCATCCATTAATTAACCCACTTTAAACTACAGCGCCAGGTGTTGACAGGACACATTCAATGGACCATCCATTAATTAACCTATTAAAACTACAGCACCAGGTGTTGACAGGACCCATTCAATGGACCATCCATTAATTAACCCACTTTAAACTACAGCGCCAGGTGTTGACAGGACCCATTCAATGGACCATCCATTAATTAACCCATCAAAACTACAGAgttcttatttttttacttaacatgtatattttttaaactgcgttgttggttaagggctcgtcagtcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactatacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgcaaggtatactacacctgttgtattcagcatttcactgtaagttctactacacctgttgtattcatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagtatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagtatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcatcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgttttcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgttttcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgttttcagcatttcactgtgaggtctactacacctgttgttttcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcggcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactatacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactaaggtctactacacctgttgtattcagcatttcactgtaaggtctactacacctgttgtattcagcatttctctgcaaggtctacctacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtctactacacctgttgtattcagcatttcactgtgaggtgtactacacctgttgtattcagcatttcactgtgaggtctactacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1805575 lncRNA downstream 29114 69486998 ~ 69507893 (-) False G1577878
TU1805592 lncRNA downstream 29589 69496404 ~ 69507418 (-) True G1577889
TU1805578 lncRNA downstream 32048 69489505 ~ 69504959 (-) False G1577878
TU1805581 lncRNA downstream 32048 69489505 ~ 69504959 (-) True G1577878
TU1805597 lncRNA downstream 35038 69155669 ~ 69501969 (-) True G1577894
TU1805969 lncRNA upstream 5138 69569796 ~ 69573123 (-) True G1578113
TU1805971 lncRNA upstream 5638 69570296 ~ 69571341 (-) True G1578114
TU1805974 lncRNA upstream 10067 69574725 ~ 69576343 (-) True G1578117
TU1805976 lncRNA upstream 14361 69579019 ~ 69579357 (-) True G1578118
TU1805978 lncRNA upstream 16900 69581558 ~ 69582390 (-) True G1578120
XM_036953621.1 mRNA downstream 184657 69333614 ~ 69352350 (-) False LOC110496775
XM_021572807.2 mRNA downstream 267582 69267910 ~ 69269425 (-) False LOC110496771
XM_036953617.1 mRNA downstream 274200 69238043 ~ 69262807 (-) True spag1a
XM_036953615.1 mRNA downstream 274202 69238043 ~ 69262805 (-) False spag1a
XM_021572801.2 mRNA upstream 148389 69713047 ~ 69726728 (-) True LOC110496768
XM_021572804.2 mRNA upstream 219878 69784536 ~ 69826838 (-) False cibar1
XM_021572802.2 mRNA upstream 219878 69784536 ~ 69826840 (-) False cibar1
XM_021572805.2 mRNA upstream 219878 69784536 ~ 69826840 (-) False cibar1
XM_021572803.2 mRNA upstream 219878 69784536 ~ 69826841 (-) False cibar1
TU1805790 other downstream 222000 69312886 ~ 69315007 (-) False G1577996
TU1805792 other downstream 222000 69312886 ~ 69315007 (-) False G1577996
TU1805797 other downstream 222000 69312886 ~ 69315007 (-) True G1577996
TU1805395 other downstream 749321 68748612 ~ 68787686 (-) True G1577745
TU1804691 other downstream 910888 68622248 ~ 68626119 (-) True LOC118941211
TU1805967 other upstream 2526 69567184 ~ 69568164 (-) True G1578111
TU1805993 other upstream 39602 69604260 ~ 69606902 (-) True G1578132
TU1805962 other upstream 46845 69611503 ~ 69615183 (-) False G1578107
TU1806069 other upstream 258084 69822742 ~ 69826756 (-) True cibar1
TU1806309 other upstream 520715 70085373 ~ 70085792 (-) True G1578414

Expression Profile