RNA id: TU1805964


Basic Information

Item Value
RNA id TU1805964
length 486
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G1578108
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69610499 ~ 69611156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTATAAGGTCTGGTCTTTCTGCAGGGCTGAGATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGATATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGATATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGAGATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGAGATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGAGATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGAGATGTGGAGGGGTGGAGGTGCTCGTCCACTCCACTCCCTCAGCTGTCCATCCTTGAAGATGAGGTTTAGAGCGGGCAGCGGAACACCAGACTCGGCCGGGGGCTGGCTGAGAGGACCGGACACTCCACTGTCAGGGTCGGGCTGACCCTGGCTGCCATCCTATAGGACACACAGgtcaggggtcaaaggtcagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1805978 lncRNA downstream 28109 69581558 ~ 69582390 (-) True G1578120
TU1805976 lncRNA downstream 31142 69579019 ~ 69579357 (-) True G1578118
TU1805974 lncRNA downstream 34156 69574725 ~ 69576343 (-) True G1578117
TU1805969 lncRNA downstream 37376 69569796 ~ 69573123 (-) True G1578113
TU1805971 lncRNA downstream 39158 69570296 ~ 69571341 (-) True G1578114
TU1805963 lncRNA upstream 347 69611503 ~ 69612055 (-) True G1578107
TU1805958 lncRNA upstream 4126 69615282 ~ 69616374 (-) False G1578106
TU1805959 lncRNA upstream 4126 69615282 ~ 69616958 (-) False G1578106
TU1805960 lncRNA upstream 4126 69615282 ~ 69616351 (-) False G1578106
TU1805957 lncRNA upstream 5330 69616486 ~ 69616958 (-) True G1578106
XM_036953621.1 mRNA downstream 258149 69333614 ~ 69352350 (-) False LOC110496775
XM_021572807.2 mRNA downstream 341074 69267910 ~ 69269425 (-) False LOC110496771
XM_036953617.1 mRNA downstream 347692 69238043 ~ 69262807 (-) True spag1a
XM_036953615.1 mRNA downstream 347694 69238043 ~ 69262805 (-) False spag1a
XM_021572801.2 mRNA upstream 101891 69713047 ~ 69726728 (-) True LOC110496768
XM_021572804.2 mRNA upstream 173380 69784536 ~ 69826838 (-) False cibar1
XM_021572802.2 mRNA upstream 173380 69784536 ~ 69826840 (-) False cibar1
XM_021572805.2 mRNA upstream 173380 69784536 ~ 69826840 (-) False cibar1
XM_021572803.2 mRNA upstream 173380 69784536 ~ 69826841 (-) False cibar1
TU1805993 other downstream 3597 69604260 ~ 69606902 (-) True G1578132
TU1805967 other downstream 42335 69567184 ~ 69568164 (-) True G1578111
TU1805790 other downstream 295492 69312886 ~ 69315007 (-) False G1577996
TU1805792 other downstream 295492 69312886 ~ 69315007 (-) False G1577996
TU1805797 other downstream 295492 69312886 ~ 69315007 (-) True G1577996
TU1805962 other upstream 347 69611503 ~ 69615183 (-) False G1578107
TU1806069 other upstream 211586 69822742 ~ 69826756 (-) True cibar1
TU1806309 other upstream 474217 70085373 ~ 70085792 (-) True G1578414
TU1806528 other upstream 773679 70384835 ~ 70387475 (-) True G1578607
TU1806734 other upstream 815064 70426220 ~ 70426577 (-) True G1578765

Expression Profile