RNA id: TU1805962



Basic Information


Item Value
RNA id TU1805962
length 3260
RNA type TUCP
GC content 0.44
exon number 3
gene id G1578107
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69611503 ~ 69615183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctcttgaatgagtaggtgttctaaaactttggaccggtagtgtatgccatgttaatgatatctgagtgagagtgacttaCAAAATCAATGGGGCGGGGGCCCTGGAAGTCAGGGCCTCTGGACATGTGCCCTGCGTGCCTGGTTGATAtttgaccatgattactacaagctggctagactaacttaccaatctaacaGTTGTTAGCGGACAaagctaattgagtgactgtcagtgactgacataagagaaaaactgctgatgcacaaccacatgtCCAACTTGCACCTGGTGTTACTATTCTAACTCTCCGtgagttgagaccccgactgaacTAATGTCacttatgcctggagccggccctggGTCTACCAGACAGATAGGGGTCTGATAGATCAATCCATCGATAGGAGACTAGTTATGAAGGGTAGGGGTCAATAATAGATCAATCTATCGATAGGAGACTAGTTATGAAGGGTAGGGGTCAATAATAGATCAATCTATCGATAGGAGACTAGTTATGAAGGGTAGGGGTCTGATAGATCAATCCATCGATAGGAGATTAGTCATGAAGGGTAGGGGTCAATAACAGATCAATCCATCGATAGGAGACTAGTTATGAAGGGTAGGGGTCAATAATAGATCAATCTATCGATAGGAGACTAGTTATGAAGGGTAGGGGTCTGATAGATCAATCCATCGATAGGAGATTAGTTATGAAGGGTAGGGGTCAATAATAGATCAATCCATCGATAGGAGACTAGTTATGAAGGGtataggttaggttaggttaggtattGGGTAGGTTGATGAGGTGATGGTGTAACCCACACAATGGTCTCTACACACTCATCATCGTCATCAACAACGATAAACAACCACTATGGGGTGGAAATGGGAGACTGAACTCTTCCATGCAAATAAAACAACCACTATGGGGTGGAAATGGGAGACTGAACTCTTCCATGCAAATAAAACAACCACTATGGGGTGGAAATGGGAGACTGAACTCTTCCATGCAAATAAAACAACCACTATGGGGTGGAAATGGGAGACTGAACTCTTCCATGCAAATAAAAAGGAAAAGAGAGCACGGATGGATCACTGAGTGTACTGCTGAGTGTACTACTGAGTGTACTGCTGAGTGTACTGCTGAGTGTACTGCTGAGTGTACTGCTGAGTGTACTACTACTGAGTGTACTGCTGAGTGTACTACTGAGTGTACAACTACTGAGTGTACTGCTGAGTGTACTGCTGAGTGTACTACTGAGTGTACTACTGAGTGTACAACTACTGAGTGTACAACTGCTGAGTGAACTACTACTGAGTGTACTGCTGAGTGTACTACTGAGTGTACTACTGAGTGTACAACTACTGAGTGTACTGCTGAGTGAACTACTACTGAGTGTACAACTACTGAGTGTACTGCTGAGTGAACTACTACTGAGTGTACTACTACTGAGTGTACTGCTGAGTGTACTGCTGAGTGTACAACTACTGAGTGTACAACTGCTGAGTGAACTACTACTGAGTGTACTGCTGAGTGTACTACTGAGTGTACAACTACTGAGTGTACTGCTGAGTGAACTACTACTGAGTGTACTGCTGAGTGAACTACTACTGAGTGCACTACTACTGAGTGTACTACTACTGAGTGTACTGCTGAGTGTACTGCTGAGTGTACTGCTGAGTGTACAACTACTGAGTGTACAACTGCTGAGTGAACTACTACTGAGTGTACTGCTGAGTGTACTACTGAGTGTACAACTACTGAGTGTACTGCTGAGTGAACTACTACTGAGTGTACAACTACTGAGTGTACTGCTGAGTGAACTACTACTGAGTGTACTACTACTGAGTGTACTACTACTGAGTGTACTGCTGAGTGTAATACTGAGTGTAATACTGTACTCCTATTCCCGAAGTGGCATTACAGATTCTGACAGGGAAAAACTCCCACTATGAATAAACAGAATCATAGATAGATTAGATTGTAATATGGTTCTTCTCTGTGAGGGATTAGGTCCAGGCTTTGGTGCTGTCTGGATAACccaagcagacctgggttcaaatagtatttgttttctttaaaaaaaaagacaagCTCAGGTCAAGCTTTCTTCTGATCCAAGGATGACCTAAAGCCAACTGCTCCTCCGGGAGTCATCACGAGCAACAACAATACCAGCATGGGTGAAAGTAAACTAGGATGAAAAGGGAACAGGGTTTTGAGTCAACATGCTGTATGATGGATCTATCTATAGGCTATAGAAGAGAAGAGCACCACACTAGTCTCACGGTGACATTTAAAGTCCCCACATTTTATCATGAAAGCAACAACACGTTAATGACAAAGAATTTTCTGAAATATTTAGTGCAGTGGTATCATGCAGGGTTTGATTGGTTCTGATCTTAGGACAActacgaggaggaggaggggttggatTGGGTTGGTTCTGATCATAGGACaatatgaggaggaggaggaggggatggttTGGTTCTGATCATAGGACaatacaaggaggaggaagaggggatggTATGGTTCTGATCATAGGACaatacaaggaggaggaagaggggatggTATGGTTCTGATCATAGGACaatatgaggaggaggaagaaaggaTGGTTTGGTTCTGATCATAGGACAATATGAGGAAGAGGAAATGGGTTGGTTCTGATCATAGGACAATATGAGGAAGAGGGGTTGGTTCTGATCATAGGACaatatgaggaagaggaggaggggttggttCTGATCATAGGACaatatgaggaagaggaggaggatttgGGTTGGTTCTGATCATAGGACAATACGACGAGGAGGGGTTTCGGTTGGTTCTGATCATAGGACAatacgaggaagaggaggaggggttggttCTGATCATTGGACAAaacgaggaagaggagggggggttgGGTTGGTTCTGATCATAGGACAATACGACGAGGAGGGTGAGGGGTTTCGGTTGGTTCTGATCATAGGACAAtacaaggaagaggaggaggggttggttCTGATCATTGGACAAaacgaggaagaggagggaggttgGGTTGGTTCTGATCATAGGACAATATGAGGAGGAGGGAAAGTCCATCAGAAACACGTACTTAAGGTGGCAAAACACTTTGGTCTTTCTGCAGGGCTGAGATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGAGATGTGGAGGGGTCTATAAGGTCTGGTCTTTCTGCAGGGCTGAGATGTGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1805964 lncRNA downstream 347 69610499 ~ 69611156 (-) True G1578108
TU1805978 lncRNA downstream 29113 69581558 ~ 69582390 (-) True G1578120
TU1805976 lncRNA downstream 32146 69579019 ~ 69579357 (-) True G1578118
TU1805974 lncRNA downstream 35160 69574725 ~ 69576343 (-) True G1578117
TU1805969 lncRNA downstream 38380 69569796 ~ 69573123 (-) True G1578113
TU1805958 lncRNA upstream 99 69615282 ~ 69616374 (-) False G1578106
TU1805959 lncRNA upstream 99 69615282 ~ 69616958 (-) False G1578106
TU1805960 lncRNA upstream 99 69615282 ~ 69616351 (-) False G1578106
TU1805957 lncRNA upstream 1303 69616486 ~ 69616958 (-) True G1578106
TU1805999 lncRNA upstream 8633 69623816 ~ 69625203 (-) True G1578138
XM_036953621.1 mRNA downstream 259153 69333614 ~ 69352350 (-) False LOC110496775
XM_021572807.2 mRNA downstream 342078 69267910 ~ 69269425 (-) False LOC110496771
XM_036953617.1 mRNA downstream 348696 69238043 ~ 69262807 (-) True spag1a
XM_036953615.1 mRNA downstream 348698 69238043 ~ 69262805 (-) False spag1a
XM_021572801.2 mRNA upstream 97864 69713047 ~ 69726728 (-) True LOC110496768
XM_021572804.2 mRNA upstream 169353 69784536 ~ 69826838 (-) False cibar1
XM_021572802.2 mRNA upstream 169353 69784536 ~ 69826840 (-) False cibar1
XM_021572805.2 mRNA upstream 169353 69784536 ~ 69826840 (-) False cibar1
XM_021572803.2 mRNA upstream 169353 69784536 ~ 69826841 (-) False cibar1
TU1805993 other downstream 4601 69604260 ~ 69606902 (-) True G1578132
TU1805967 other downstream 43339 69567184 ~ 69568164 (-) True G1578111
TU1805790 other downstream 296496 69312886 ~ 69315007 (-) False G1577996
TU1805792 other downstream 296496 69312886 ~ 69315007 (-) False G1577996
TU1805797 other downstream 296496 69312886 ~ 69315007 (-) True G1577996
TU1806069 other upstream 207559 69822742 ~ 69826756 (-) True cibar1
TU1806309 other upstream 470190 70085373 ~ 70085792 (-) True G1578414
TU1806528 other upstream 769652 70384835 ~ 70387475 (-) True G1578607
TU1806734 other upstream 811037 70426220 ~ 70426577 (-) True G1578765
TU1806732 other upstream 873664 70488847 ~ 70489503 (-) False lrrc69

Expression Profile