RNA id: TU1805959


Basic Information

Item Value
RNA id TU1805959
length 1677
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1578106
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 69615282 ~ 69616958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTGTAACATACAGTATTGATATTTACATTGAATAATAACATCTCAGGCGGTGAACAAGATGTCAGGAGGAATGCCACATTTTGTTCCCACTTCATTACACACATTCTTTGTATATCGTTTAATTTTACATTTTTGTGACTGTCCCATCGAACAAGCTACAACAAAGATTCCTAAAATGCAAGGTTGGCATTATATAAAACAATTGGTAAATAATGGTAACTATTGGTAACTCTAACACTGTGGTGGAGGTTAGGAGGGTGGATGTTCTGGTAAGGGTCTACCCAGGGATGGCTCTAGCATTTTGAAGACCCTAAACAAGATTTGGTTGCAGGCAAAACATTTTGGTGCCTCCCCCCTCCTCCGCTCCCGACGGCGGAGAGAATTTTGTGTGTAGAATTTtcttcaattctacacattttgccatgacttacaATTCCGGGtatttcaagggtttttctttattcttactattttctacattgtagaataacaatgaaaacatcaaaaccatgaaataacacatttggaatcattagtaaccaaaaaagtgtcaaacaaatcaaatagTCACcttttgccttcatgacagctttgcacatgcttggcattcttGGCATttgtttccttcttaatgcatttgagccaatcagtgtgttgtgacaaggtagggggagtatacagaagatagccttatttggtaaaagaccaagtccatattatggcaagaacagctcaaataagcaaagagaaattacagtccatcattactttaagacatgaaggtcagtcaatcaggaacatttcaagaactttgaatgtttcttcaagtgcagtcgcaaaaaccatcaagcgcaatgattACATTGGCgctcatgagaaccgccacaggaaaggaagacccatagttacctctgctgcagaggataagttcattagagttaccagcctcagaaactgattgaatcaggccttcatgatcgaattgctgcaaagaaaccactactaaaggacaccaataataagaagagacttgcttgggccaagaaacatgagaaatggacattagaccattggaaatctgtcctttggtctgatgagtccaaattggagatttttggttccaaccgccgtgtctttgtgagacgaggtgtggctgaacggatgatctccgcatgtgtatttcccaccgtgaagcatggaggaggtggtgttatggtgtgggggtgctttgctggtgacactgtcagtgatttatttagaattcaaggcacataaccagcatggctaccacagcattctgcagcaacacgccatcccatctggtttgggcttagtgagactatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaatagctatttgaccaagaagcgtgatcaagtgctgcatcagatgacctgacctccacaatcccacgacctcaaccaaattgagatggtttgggatgaatcagactgcagagtgaaggaaaagcagccaacaagtgctcaacatatgtgggaactcctatgtggaaaagcattccaggtgaagctggttgtgagaatgccaagagtgtgcaaagctgtcatcaaggcaaagggtggatatttgaagaatctcaaatataaaatatattttgatttgtttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1805963 lncRNA downstream 3227 69611503 ~ 69612055 (-) True G1578107
TU1805964 lncRNA downstream 4126 69610499 ~ 69611156 (-) True G1578108
TU1805978 lncRNA downstream 32892 69581558 ~ 69582390 (-) True G1578120
TU1805976 lncRNA downstream 35925 69579019 ~ 69579357 (-) True G1578118
TU1805974 lncRNA downstream 38939 69574725 ~ 69576343 (-) True G1578117
TU1805999 lncRNA upstream 6858 69623816 ~ 69625203 (-) True G1578138
TU1806000 lncRNA upstream 9089 69626047 ~ 69626341 (-) True G1578139
TU1806001 lncRNA upstream 10302 69627260 ~ 69627869 (-) True G1578140
TU1806002 lncRNA upstream 11579 69628537 ~ 69629253 (-) True G1578141
TU1806004 lncRNA upstream 14544 69631502 ~ 69632270 (-) True G1578143
XM_036953621.1 mRNA downstream 262932 69333614 ~ 69352350 (-) False LOC110496775
XM_021572807.2 mRNA downstream 345857 69267910 ~ 69269425 (-) False LOC110496771
XM_036953617.1 mRNA downstream 352475 69238043 ~ 69262807 (-) True spag1a
XM_036953615.1 mRNA downstream 352477 69238043 ~ 69262805 (-) False spag1a
XM_021572801.2 mRNA upstream 96089 69713047 ~ 69726728 (-) True LOC110496768
XM_021572804.2 mRNA upstream 167578 69784536 ~ 69826838 (-) False cibar1
XM_021572802.2 mRNA upstream 167578 69784536 ~ 69826840 (-) False cibar1
XM_021572805.2 mRNA upstream 167578 69784536 ~ 69826840 (-) False cibar1
XM_021572803.2 mRNA upstream 167578 69784536 ~ 69826841 (-) False cibar1
TU1805962 other downstream 99 69611503 ~ 69615183 (-) False G1578107
TU1805993 other downstream 8380 69604260 ~ 69606902 (-) True G1578132
TU1805967 other downstream 47118 69567184 ~ 69568164 (-) True G1578111
TU1805792 other downstream 300275 69312886 ~ 69315007 (-) False G1577996
TU1806069 other upstream 205784 69822742 ~ 69826756 (-) True cibar1
TU1806309 other upstream 468415 70085373 ~ 70085792 (-) True G1578414
TU1806528 other upstream 767877 70384835 ~ 70387475 (-) True G1578607
TU1806734 other upstream 809262 70426220 ~ 70426577 (-) True G1578765
TU1806732 other upstream 871889 70488847 ~ 70489503 (-) False lrrc69

Expression Profile