RNA id: TU1806309



Basic Information


Item Value
RNA id TU1806309
length 420
RNA type TUCP
GC content 0.46
exon number 1
gene id G1578414
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 70085373 ~ 70085792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcctggtcacatcaatacaatggtctcattaccaaggctgtcctggtcacatcaatacaatggtctcattaccaaggctgtcctggtcacatcaatacTATGGCCTCattaccaaggctgtcctggccacatcaatacaatggtctcattaccaaggctgtcctggtcacatcaatacaatggtctcattaccaaggctgtcctggtcacatcaatacaatggtctcattaccaaggctgtcctggtcacatcaatacaatggtctcattaccaaggctgtcctggCCACATCAATACAATTGTCTCattaccaaggctgtcctggtcacatcaacacaatGGTCTCATTGccaaggctgtcctggtcacatcaatacaatggtctcattgccaaggctgtcctggtcacatcaataca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1806303 lncRNA downstream 4008 70080945 ~ 70081365 (-) True G1578408
TU1806301 lncRNA downstream 7495 70077625 ~ 70077878 (-) True G1578406
TU1806299 lncRNA downstream 8395 70076774 ~ 70076978 (-) True G1578404
TU1806271 lncRNA downstream 28791 70056291 ~ 70056582 (-) True G1578378
TU1806265 lncRNA downstream 41640 70043495 ~ 70043733 (-) True G1578372
TU1806325 lncRNA upstream 10514 70096306 ~ 70096526 (-) True G1578428
TU1806332 lncRNA upstream 14914 70100706 ~ 70100936 (-) True G1578435
TU1806344 lncRNA upstream 39348 70125140 ~ 70127813 (-) True G1578446
TU1806347 lncRNA upstream 71970 70157762 ~ 70158124 (-) True G1578449
TU1806366 lncRNA upstream 96203 70181995 ~ 70182233 (-) True G1578466
XM_021572803.2 mRNA downstream 258532 69784536 ~ 69826841 (-) False cibar1
XM_021572802.2 mRNA downstream 258533 69784536 ~ 69826840 (-) False cibar1
XM_021572805.2 mRNA downstream 258533 69784536 ~ 69826840 (-) False cibar1
XM_021572804.2 mRNA downstream 258535 69784536 ~ 69826838 (-) False cibar1
XM_021572801.2 mRNA downstream 358645 69713047 ~ 69726728 (-) True LOC110496768
XM_036953639.1 mRNA upstream 373183 70458975 ~ 70490900 (-) False lrrc69
XM_036953640.1 mRNA upstream 373183 70458975 ~ 70490901 (-) False lrrc69
XM_036953643.1 mRNA upstream 484837 70570629 ~ 70608051 (-) False LOC118941214
XM_036951083.1 mRNA upstream 560151 70645943 ~ 70718404 (-) True LOC118941013
XR_005037548.1 mRNA upstream 648590 70734382 ~ 70734801 (-) False LOC118941215
TU1806069 other downstream 258617 69822742 ~ 69826756 (-) True cibar1
TU1805962 other downstream 470190 69611503 ~ 69615183 (-) False G1578107
TU1805993 other downstream 478471 69604260 ~ 69606902 (-) True G1578132
TU1805967 other downstream 517209 69567184 ~ 69568164 (-) True G1578111
TU1805792 other downstream 770366 69312886 ~ 69315007 (-) False G1577996
TU1806528 other upstream 299043 70384835 ~ 70387475 (-) True G1578607
TU1806734 other upstream 340428 70426220 ~ 70426577 (-) True G1578765
TU1806732 other upstream 403055 70488847 ~ 70489503 (-) False lrrc69
TU1807000 other upstream 668367 70754159 ~ 70756675 (-) True G1578949
TU1806999 other upstream 673367 70759159 ~ 70760786 (-) True G1578948

Expression Profile