RNA id: TU1810337



Basic Information


Item Value
RNA id TU1810337
length 241
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1581634
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 74466959 ~ 74467199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gctctgaagccaaactgcatggagtgtaatgtgaaggggctgttgttgaggtgggcaatcagttgttctgctacacacttttcaacaacctttgacaccacaggtagtatactaatgggcctgtagttactcacgtcagcagggtcgcctgatttaaagatggccgttattatggccgacttccatacccttggaaacacaccgagaccaatggatgtgttggtgaccttagtaatggggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1810330 lncRNA downstream 10744 74455951 ~ 74456215 (-) True G1581627
TU1810222 lncRNA downstream 107579 74358709 ~ 74359380 (-) True G1581522
TU1810197 lncRNA downstream 157880 74308506 ~ 74309079 (-) False G1581498
TU1810198 lncRNA downstream 157880 74308598 ~ 74309079 (-) True G1581498
TU1810159 lncRNA downstream 162994 74303747 ~ 74303965 (-) True G1581461
TU1810339 lncRNA upstream 3139 74470338 ~ 74470621 (-) True G1581636
TU1810426 lncRNA upstream 20277 74487476 ~ 74488184 (-) False G1581715
TU1810427 lncRNA upstream 20277 74487476 ~ 74488072 (-) True G1581715
TU1810428 lncRNA upstream 27554 74494753 ~ 74495356 (-) True G1581716
TU1810471 lncRNA upstream 80729 74547928 ~ 74548252 (-) True G1581751
XM_036953667.1 mRNA downstream 29015 74418135 ~ 74437944 (-) True mc5ra
XM_021559729.2 mRNA downstream 135865 74309482 ~ 74331094 (-) True LOC110487813
XM_036953666.1 mRNA downstream 351392 73822008 ~ 74115567 (-) False LOC110496905
XM_036953664.1 mRNA downstream 703436 73755364 ~ 73763523 (-) False LOC110489356
XM_021572791.2 mRNA downstream 1021797 73433715 ~ 73445162 (-) True LOC110496758
XM_036953668.1 mRNA upstream 29183 74496382 ~ 74540849 (-) False ldlrad4a
XM_036953670.1 mRNA upstream 29183 74496382 ~ 74540849 (-) True ldlrad4a
TU1810332 other downstream 8643 74457682 ~ 74458316 (-) True G1581629
TU1810323 other downstream 19970 74446596 ~ 74446989 (-) True G1581622
TU1810163 other downstream 159281 74306778 ~ 74307678 (-) True G1581465
TU1810036 other downstream 309212 74157305 ~ 74157747 (-) True G1581344
TU1809850 other downstream 633755 73828092 ~ 73833204 (-) True LOC110496905
TU1810456 other upstream 54959 74522158 ~ 74532080 (-) True G1581737
TU1810529 other upstream 141289 74608488 ~ 74613460 (-) True G1581793

Expression Profile