RNA id: trnal-cag-27


Basic Information

Item Value
RNA id trnal-cag-27
length 83
RNA type mRNA
GC content 0.60
exon number 1
gene id trnal-cag-27
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 795780 ~ 797202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaggatggccgagcggtctaaggcgctgcgttcaggtcgcagtctcccctggaggcgtgggttcgaatcccacttctgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1810864 lncRNA upstream 517 795780 ~ 796493 (+) False trnal-cag-27
TU1810858 lncRNA upstream 517 795888 ~ 796493 (+) True trnal-cag-27
TU1810860 lncRNA upstream 647 795780 ~ 796363 (+) False trnal-cag-27
TU1810857 lncRNA upstream 647 795888 ~ 796363 (+) False trnal-cag-27
TU1810798 lncRNA upstream 105376 691415 ~ 691634 (+) True G1582038
TU1810919 lncRNA downstream 43693 840785 ~ 842133 (+) True G1582101
TU1810922 lncRNA downstream 45171 842263 ~ 842982 (+) True G1582102
TU1810923 lncRNA downstream 46775 843867 ~ 891587 (+) True G1582103
TU1810947 lncRNA downstream 93995 891087 ~ 998973 (+) True G1582117
TU1810959 lncRNA downstream 138114 935206 ~ 935588 (+) True G1582127
XM_036953852.1 mRNA upstream 2639 783571 ~ 794371 (+) False LOC110518435
XM_036953851.1 mRNA upstream 2639 783586 ~ 794371 (+) True LOC110518435
XM_036953850.1 mRNA upstream 2640 783571 ~ 794370 (+) False LOC110518435
XM_036953888.1 mRNA upstream 13934 763997 ~ 783076 (+) True LOC118941386
XM_036953863.1 mRNA upstream 33122 755382 ~ 763888 (+) True LOC110534579
XM_021619484.2 mRNA downstream 23819 820911 ~ 822554 (+) True LOC110534574
XM_036955455.1 mRNA downstream 53583 850675 ~ 858141 (+) True LOC110514371
XM_036953877.1 mRNA downstream 70913 868005 ~ 869609 (+) True LOC110515399
XM_036953868.1 mRNA downstream 101460 898552 ~ 901052 (+) True LOC110518152
XM_036953874.1 mRNA downstream 121793 918885 ~ 927203 (+) False LOC110515221
TU1810551 other upstream 745819 48547 ~ 51191 (+) True LOC110516050
TU1810907 other downstream 13153 810245 ~ 958446 (+) True G1582090
TU1811015 other downstream 764413 1561505 ~ 1564669 (+) True LOC110510959
TU1811023 other downstream 784999 1582091 ~ 1601733 (+) True LOC118941396
TU1812046 other downstream 1401836 2198928 ~ 2200873 (+) True G1583003
TU1812356 other downstream 2000011 2797103 ~ 2803431 (+) True LOC110518136