RNA id: TCONS_00005738


Basic Information

Item Value
RNA id TCONS_00005738
length 602
lncRNA type sense_over
GC content 0.52
exon number 4
gene id XLOC_002484
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 304596 ~ 309894 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTTCtgctcttcatcatcttcatctgcaCATTCAGCTCTCACGTCAGTGTGGCGTGGAGATCTCAGACTGAGTTCAGTGTTTCTGGACGAGCGCTCTACAAACTGGACCTGTCCTGGCCCAAGTACCCAGAGTTCTTCACTGGACAGGTGTTTGCGGTGGCCGTCAATCATCTGGCGGGGCTGGTGTACGTGGCGCAGagaGGTGAGAATGTCCCTAAAGTGTTAGTGTTCAGCACAGACGGAGAGTTTCTTCAGGCCTGGAACTCCAGCACTCTGGAAATGCCTCATGGAATCTTCCTGGCCGATGCGTCCACCGAGCCCACACTCTGGGTCACCGATGTGGGGAacgggcCGTTCGGGCACACTGTAAAGCAGTACTCTCCATCTGGGAAGCTGCTGCAGGTTTTGGGAACTCCAGGTACAGCAGGATCGTCTCTCAGTCCGCTTCAGTTCGATCAGCCGGCAGAGATATTCGTCCACAGCTCTGGAGAAATCTACATCGTGGACGGAGACGGAGGAATGAATAACCGCCTCATCAAACTCTCCAAAGGTGACACTAACTAaaatatgaatcatttattaaaacatgCCGGTTTACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004649 lncRNA downstream 99263 207082 ~ 208586 (-) True XLOC_002481
TCONS_00005958 lncRNA downstream 127145 179863 ~ 180704 (-) True XLOC_002480
TCONS_00005957 lncRNA downstream 132287 167409 ~ 175562 (-) True XLOC_002479
TCONS_00005956 lncRNA downstream 137429 167409 ~ 170420 (-) False XLOC_002479
TCONS_00005955 lncRNA downstream 138193 167409 ~ 169656 (-) False XLOC_002479
TCONS_00005739 lncRNA upstream 44240 354093 ~ 354657 (-) True XLOC_002488
TCONS_00005740 lncRNA upstream 46702 356555 ~ 358707 (-) True XLOC_002489
TCONS_00005959 lncRNA upstream 106144 415997 ~ 420862 (-) False XLOC_002491
TCONS_00005960 lncRNA upstream 106144 415997 ~ 420918 (-) False XLOC_002491
TCONS_00005961 lncRNA upstream 106144 415997 ~ 421109 (-) False XLOC_002491
TCONS_00004652 mRNA downstream 5022 284305 ~ 302827 (-) False XLOC_002483
TCONS_00004653 mRNA downstream 7849 284354 ~ 300000 (-) True XLOC_002483
TCONS_00004651 mRNA downstream 9401 284303 ~ 298448 (-) False XLOC_002483
TCONS_00004650 mRNA downstream 63104 236457 ~ 244745 (-) True XLOC_002482
TCONS_00004648 mRNA downstream 97146 206996 ~ 210703 (-) False XLOC_002481
TCONS_00004655 mRNA upstream 1869 311722 ~ 322769 (-) False XLOC_002485
TCONS_00004656 mRNA upstream 2064 311917 ~ 320153 (-) True XLOC_002485
TCONS_00004657 mRNA upstream 13548 323401 ~ 342564 (-) True XLOC_002486
TCONS_00004659 mRNA upstream 50384 360237 ~ 373575 (-) True XLOC_002490
TCONS_00004660 mRNA upstream 290311 600164 ~ 641609 (-) False XLOC_002493
TCONS_00004640 other downstream 231658 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 233459 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004658 other upstream 30059 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004703 other upstream 2556867 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2558625 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3196687 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3458798 3768651 ~ 3768766 (-) True XLOC_002530

Expression Profile

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