RNA id: XR_005037626.1


Basic Information

Item Value
RNA id XR_005037626.1
length 392
RNA type mRNA
GC content 0.56
exon number 3
gene id LOC118941408
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2737086 ~ 2770154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaggtagcctTGTTGAGTGAGTGAAGATTAATGTCGCGCTTTTCCCGTGCACGCACCTGCCTTGGGACTAGACTCCACCGGAGCTGCCTCACATTTGAACTGGAAAACCTTGCGCGTGTCGGTGTATCTGGATTAACGGAATGGATTAGAGATCTAAGAACGCCCCTTTCCCATGTCGGAGGAGATGAAGAAGCagcaccctcctcttcctcaccaggatgtccagagagagatcagagaggggGAGTAACTGGGGATACACCATGATGGAGCCCTGATACAGAGGACAGAGCAcagTTAAATGGAGGAGCGGGACAGAAGCCGCTCCCCGTCCCGCAGGACAAGTCGGGTGGAGCAGGTGGTGGGGCGATGGCTACGACGCTCCAGGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812123 lncRNA upstream 2939 2705981 ~ 2734147 (+) True G1583039
TU1812351 lncRNA upstream 6359 2729831 ~ 2730727 (+) True G1583212
TU1812284 lncRNA upstream 23747 2518122 ~ 2713339 (+) True G1583163
TU1812340 lncRNA upstream 26849 2680594 ~ 2710237 (+) True G1583201
TU1812227 lncRNA upstream 32656 2351645 ~ 2704430 (+) True G1583120
TU1812393 lncRNA downstream 20427 2790581 ~ 2791419 (+) True G1583238
TU1812411 lncRNA downstream 27130 2797284 ~ 2798738 (+) False G1583241
TU1812412 lncRNA downstream 27130 2797284 ~ 2798738 (+) True G1583241
TU1812357 lncRNA downstream 43720 2813874 ~ 2815294 (+) False G1583215
TU1812358 lncRNA downstream 43720 2813874 ~ 2815294 (+) False G1583215
XR_005037627.1 mRNA upstream 573824 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 860770 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 887750 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 917114 1819901 ~ 1819972 (+) True trnaq-cug-118
trnae-cuc-281 mRNA upstream 1020997 1716018 ~ 1716089 (+) True trnae-cuc-281
XM_036955460.1 mRNA downstream 139 2770293 ~ 2811692 (+) False LOC110518136
XM_036953909.1 mRNA downstream 118809 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 136663 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 229668 2999822 ~ 3000856 (+) False LOC118941407
XM_036953927.1 mRNA downstream 262319 3032473 ~ 3091701 (+) False LOC110517772
TU1812046 other upstream 536213 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 1135353 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 1172417 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1778640 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2685895 48547 ~ 51191 (+) True LOC110516050
TU1812356 other downstream 26949 2797103 ~ 2803431 (+) True LOC110518136
TU1812361 other downstream 43720 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 43720 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 43720 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 43720 2813874 ~ 2815294 (+) False G1583215

Expression Profile