RNA id: XM_036955460.1


Basic Information

Item Value
RNA id XM_036955460.1
length 7769
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110518136
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 2770293 ~ 2811692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGGTTCGTCTGGAGAGCGTATCCTGGTAGATGGGAAGGCAGCTGCGGGGGGAGAGTCTAGCGGTCAGGATCAGAAGAACAGCTACCCGGTTAGACTGACCGTCCAGCTCCTACGAGACCCCCTCCTCAACACTCATGGAATCACCCTGACACCTCAGACACCCATACTGGTGCAGGACATCACCCCAGcGGGGCCGGCTGATGGAAGGCTCGTCCCTGGCGACCAGGTCGTAAAGATTAACAATGTTGCCGTCGACGACCTGACCCCAGAGCAAGCGGCTGACCTCATCAGgGAGTGTCAGCACTCTGTGATGATAACGGTCCTCAGAAACTCAGCGGGACCCAAGTCTTCCTTCATCACCCCAGAAAAGAGAGCTAAACTCCGGTCCAACCCGGTCAAAGTTCGCTTTGCTGAGGAGATTGAGGTCAATAGTCACTCTCAGGGCAACTCGCTGCTCTTCCTCCCCAACGTTCTAAAGGTGTATCTGGAGAACGGACAGACTAAGGCCTTCAAGTTTGAACCCAACACCACTGTCAAGgacatagtgatGACCCTGAAGGAGAAACTGTCTCTGTCTCGTATTGAACACTTCTCTTTGGTTCTGGAACAGAAGTATAGCATCAGTAAACTGCTGTTGCTACATGAAGAGGAGAGGATACAACagGTGGTTCATCAGAAGGAAGTCCATGACTACAGATGTCTGTTCAGAGTGTGTTTTATACCCAGAGAACCTGAGCACCTGTTACAAGACGACCCCACTGCCTTCCAGTACCTCTACCTGCagggtataAATGACGTGCTACAGGAGCGTTTTGCAGTGGAGATGCGTTGCAACACGGCCCTGCGTCTGGCAGCCCTGCACATACAGGAGAGACTAGCCAGCTGTGGACAGTCACCTCGGACCAAACTCAAGATCATCACGAAGAGTTGGGGCATTGAGAACTTTATCTCTTCAACCCTCCTGAGGAACATGAGGGAAAAGGATCTGAGAAAGGCCATTGGCTATCACATGAAGAAGAGCCAATCACAGGAGCCAAAGCAGAAGGTTCTGTCGGCCAATCAGGCGAAGATTAACTACCTGGAGGAGCTGTGTGACCTCAAGTCCTTTGGCGGGAAGTCCTTCAGCGCCACCATGATGcTCCAAGACAGAGAGTCGATGGTGACCCTGTTGGTGGGGTCGCGGTACGGTATCAGTCAGGTGGTGAACCACAAACTGAGCATCATGACCACCCTCACAGAGTTCAGCAGTATCACACGCATAGAGCTGCTACCAGAGTCTGACCGCGTCAGTCTGGTCAAGATATATCTACAGGACATCAAGccgATCACCCTGTTGTTGGAGTCAATAGCAGCTAAGGAACTGTCCTGTCTGGTGGCAGGGTACTGTCGTGCCCTAGTGGACCCCAGCCTCATCATCTTCCCCTGGACACAGGACGGCAAGCAGCACCGCGTGTCTGCTGAGGAGGgTTATGTGTCGCGGGGTGGCAGTGACTCGGACGATTCCTCCGACATGGATATGGACACTCTCATCTCCCTTGTATCCCATAACAACAAGCGAACCACATCAGACCCGGTCGGTCTACGCCGGAttatggaggagaggaaagaggagaggaaagagaggaaggagagagaggagaggaaaaagaatgagaagggagaaggagaacAAGAGAAAAATATGAAATACGGAACTATGTCTCCACTGAGAAAAaacagaaagaaggagagaattgAGGAGAAGGTGGGGGGAgttggggaccagagagagaaagacacaaacGCAGGAGGAGAGGTGAACTCTGGGAAACAACGAGGAGCAGAGAACGGAGGAATGCAGAAagatgacagagaaagagaggatgagagcacaaagaaggaaagagaaggaaaggagaggaaagcagaggaggagagaggaggaggggagaggaaaagagaggaggagagaggaggaggggagaggaaaggagaggaggagagaagaggaggggagaggaaaggagaggaggagagaagaggaggggagaggaaaggagaggaggagagggaaggaggggaggttCGGGAAGCTATGACAGAAGAGCACCGGTCCGTATCAGAGGAGGCGTCAGACTCGTGTCGTACTGATTCTCGTTTCATGACCAGCATCTCCAGTGACTCCCTGGATGCTCTGGAGGAAGATGACCTGATCGCctgctcttcctccctccctcaccctcaccctcccttCCGCCTCACAGTGGAGCCCCCTCATCCCCAGCCTCACCCACGAGAGGGTGCATCCTCACCCCAAGGAGGggcaggagagtggagaggagaaggaggtggaggggggtcaggagataggagaggtgtaggaggagagtggagaggaggtgtaggaggagagtgtagaggagaggtagaaggagagtggagaggagggggaggagagtgcagaggagggggaggagagtgcagaggagggggaagagggaggagatcGGGCAACGGAGCTTGGGGCAACTCTCACCATTCTCCCATGACCCCTGACTCTATGAACTCTGAACCTGTGACCCCCGTTGTTGACCCCTCTGAGAACCTGAACTACGCTGAGCTCTCTCTCATGCTGGAGTACCTCCCCAGTCCTCCGGAGGCGAGTGacgatgaggatgaggaggagaagagggaagagaggaggaggagtaatgAAGGAACTGGACAGGAGGTATTTTCTGTATCCGGATGTCcccgttcctcctcctcctcacttatGGACTGTGTGTTTACCTTTGAGCAGAGCGACGCGAGGCATTACTACAATATCTGCCCTAATGTTACCCCCGACAGCACCCGCAGCCTCACCCACCCTCACCCTGAgactgaggaagaggaagatggtgGTGAGGAGGAAGAGCAGGGGGGGCTCCTAACCTTGGAGCCCGTGCCCATCCTCCAGCCGCCTCCAGGGTTCGGAGACAGCAGTTCTGATGAGGAATTCTTTGATGCGAGGGATCGGATCGCCTCGCCTGAAGACCCAACATCAGGGACTGTGTCCAGAGatttttcagCCGAGATGACGAGTGGAATGACGCAGCAAACTGTGAGCCTGAGTGACATCAGAATCAGCCTGGCTGAAGGAACGAggcatgaaagagaggaggagggtagagagggcgAGACCagcgaaggaggaggagggagagacatgtTCTCCAGGCTCTCTAGGAAAAGATCGAAGAAACGGCGTTCCTTCATGCAGACCGACTTCACCTCAACAGTCTCCTACCCTGGACCGGATGAAAACCAGGAGCGGAACAGGAACCCAGATCACGTTCCTGATCAGTATCGGGACCGGGCACAGAACCGGAGAGAGAGCTCAGACGAAAGCCAGCAGCTGAGTCTGGACCCAGAACCATCTGAGCAGAGCCAGAACCCAtgtcctactgtctcctctctgagcCACGCCGAGGGTGAGGCGTCCCAGCTCGAGTCCAAGCCTATCCTCGCCAAGCCCAGTCCAGAGGGGTCCCATCGGGGACCTGGAGAGCCATGTGTGCTTGGTAACCCAAAGGGAAATCCACGGGCGCCTGATACCCCGAAGGGTGACCTCCATAGGAGCTCCAGGAACAGGCGGCAGTCCATGGAGACGGAGCCCGACATGATGGAGTCCAAATCGGTCACGGCCCTGGTGACGGCAGCCTCCCTCTCCATCACGGCTGTCCGCTGTAGAGTAGAACCAGACGGCAAGGAGAGCCCTGATCGGAGAGGAgacggggaggaggtggagggagaggaggggggtggagaagCAGGGGCAGGACCATTCACATGTCACATGTTTTTGACTGAGattaaggaggaggaggggcagaggggggaggaaacaggggaggagggggagagcgacagagaggagagacagcccTCGCTCATTTCTGAAGGACCACCCTCTGTTAGGGGGTCCCAATTTAGTAGACGACCTCTGTGTCTCACGAAAGACGAGGATCAGGAAGCCTCTTTCGTACCCCAAATAAGTATCTCCCATCCAGGTGTGTATGGGAGGGACACGGGGGGTGAACAAGACGTGGCTGGTGGTGAGGAGAGCGTGACTCCCCtttctgctcctcctccccccacctctccactgCCACCATTCCCAGCCCCCTCCATcccccacacagagagaggagagagggatagcaaGGATGGGAATGTTTGGTCTCAACCCAAACTTTTCACACtctcagacagagagaaggacatTAGCTACTTGACTCAAGTCCATAGAAAACTCACTATCAGTCACCAAGACCTGACAAGCCAAAGGAAAGCAGAAATTGACAATGATGAAGCTATAGATAGCACTAATTCTGTTACTGATAACACTGATGTTGCTACGGCTAACATTGCAGCTACAGGCAACATTCATTCTGTCATGGCTAACACTGAGACTACAGTTGACTCTGATTTAGCCATTGCTAATCACAAAGATACAAACAGCATCAAATCTGTACCAGCTAACACTATAGCTTATGCGGATTTTGCTATGACTAACAATGAAGCTAATGCTATAATTAATTCCCTTACAACTAGCAATGATTCTACAAGTAATGCTAACTTAGCTATGACTAATGCTAATTCAGCTAATGCCAACTCAGCTATGGCTAACATTCCCAAAGAGTCTCCCATATCACCTACAACAGGCTTCCTCCTCCGGCCTTGCTCACCGGGCATCATCGGGCAAAGCCTCTCGGCCTCCACATTACGGGGGAAGATCCAGAGCCTGCCCCTCTATTTATCTCGCTCCCAGGAAACCCTCACCCTCTCTGGGGTGGGAAGCCCCATCAGGAGCCCCTCTCCGGAGACCACCAGCAACAAGACTGAGGTAATGGTCACCACCGAAACCACCAAGTACGACGATGTCACAAAGGTGGCAACAGGGGAGGATTTGAAAGATTCCGGGGTGGCGTTGGTAGAATCGGATGATTCTGAGGTTACGCTGACAGAATCGGAGGTTGGCGAGGTTGTTGTGGAGACGGCCGGGGCGGAAATCACGAGGTTGACGGTTTCAGAGGTCAAGGAGGTGATCGAGAAGGTTGTGATGGTCTACggatcctcccttcctccccctttaGCACCCATCTCTCTAGAGTCCAAACCAGATCCCAAAATGGTTGTCAAGTTGCCTACCTGTCCCATTGCTACAGTGGAAACTGCCCCTCCTATGGCTCCAGCACCTATCTGTCTGGAGCCCAAACCAGTCCCTGAACTACTCTCCCCAGGCTCCACTATCCACAAAatggccactccattaccttCCTGTCCTTCCTTTCCCGTGCCCATACGCGTAGAGCCCAAACCAGACCATGAACCACTATCCATACGCTCCAAAATGGCCGCCTTGTCGTCTTCTTATCCCCCTGCTTTAGTGGTAACCACAGAGAGTCTGAATTCTTCTTCTTCTAATCCTCACCCCATCAGAGTAGAACCCAAGCCAGAGCCTTGCCCCGAACCCCTTTCAGGCCCTAAAATGTCTGCTCCGTTGTCTTCCTGCCCCTCTGCTTTAGTGGTGACCACACAGAGTCTGAACGGACCGGGGCTCAGCTTCCCTGGTTCTAACATGAGAGGACAGCCATTTGGGAGCAACAGCTTCTGTAGACCCCCAGGTGAGGAGGCAGGCCTGCTGAACACTCTGACTACAGGGTGTGGGGTCTTCACCTCCACCTGTGAGACCCAGCCCAACCAGGCCCACATGGAATCCTATTCGCAGGCAAAGCCTGACTTTGGGTGTAGCTCGGTGCTGGCGTCAGGGTGCGAGACGGTCCTGGAGGGGGTGCAGACGCCCCTGGAGGCATGCAGGTGTCCACCACCACTGGTGTATACCAACTGTTTCAGCGGGGGTGACAGCTTCGACGATGAGTTGACAGTTTACGAGTTCTCCTGCCGGACAAGTTCTCCTCCCGCCTCCCAACCCTCTTCCTCTGCGCTGGCCCTACCTCTCacgacctctcctcctctctcctctttcctctcctcctcccctccctcctccctcctctctccctccttccctcgctccgTCCTGCCCCCATCCTCCTCCATGGAGCTCTCACCACTCCTCTCCCCGCTCCTTTCCCCGTCCAACTGCTTCTTGTCCCAGTCAAGTCTCCATGATGATATCAGCCGACTACGCCACCGCCGCTTCCCACCGCCCCCCGCAGGGTTCCAGACCATCCGGAGCGACGTGGACGAGCTTCTCACCCTCCTGCAGGGGGGGAGGATGGGGAGCAGAGGGGGGAGGCACCCCAGGGAGACCTGCGCCACCCACTTCTCAGAGAACAAGCGTCTTCTCCACGGGGAGGCCCGGAGGCTGATGGCTGGCTGTCAGAAGGTGGTCCGGGTGGGGCAGACTCCAGACGAGATGCTCTTCTCCCTCTCCGACAGCTTCAGGACCCTGGTGGGCATGGCCGGCATGTGCCTATGGTTCTCTGGGTGCGACCGGTGCGACCGGAGGAATGCCGAGGCACTGGCGGGGCTGGCGGACGTGGCCAGAACGTACCGGGAGTTTGTGCTGGCGGCGGAGAGGGCGAGCGGGAGGCGTAGCTGTCATGACCTCAGCACCAAGCTCCTTGCCAAGCAGTGTACCGCCCTCACTGCTTCTGTCTTCTGCCTCACACAGCTGTTCCGCACACTCACCGCGCTCTGAACTGAACCAACGATCTCTGACCCCTATAACAACATGTCGGTTGACCTTTCAATTCTGACCTCTAGACCCACTACACAGGGTTgccagccaatcagtcagtcaccAGGCTGACTGGGGAATGAATGTGTGAACTGCAACAGGTCCACGTAGCGACCAAAAAAAAAGTAGAAGCACaattgaaaggagagagagatgagacaagaCGGGATGAAACAAGACAGTTCTAGTGTCCTGTGACATCATGGAGAGCCTCTGTGGCATCATAAATAAGGAACCTCTATGACATCACAAAGTGCCtgtgtgacatcacagagaacaTGTGACACGCTGGAAGACATAAAAGTGATGTCATAACAGGTCCCAAATGACTGTTCAGCTTTTTTAAccgtaacctacagtacactgtgCTGAAACCACACGAGGGACAAACTGGACATACGTAGCATCATCACCACACTGCAAGAAGCCTCACGCAATGACAATCTCCGGACTCAAAGCCGACCTGCTTTAATAGAGTATTTAAGTAACTATTATATTTGAATGtcaattatttatttgttttcattcattatttatttgttttcattcattatttatttgttttcattcattatttatttgttttcattcattatttatttgttttcattcattatttatttgttttcattcattatttatttgttttcattcattattatttgttttgatgtattatttatttgtGATGTTATCACTTTGATTATTGATTCTGTATGGTATTGGTGTGGGGTGTGAGAAAGAGGAATGTGGAGGGGTGTGTTTACAGAAAAGAGGATCTATGTATCTACACAAACACTCCAGAGTTGGCTGAAAGGTACAGGCATGTTGATTGTGTTATTATTTGGCTGATCAGTCAGTGGAAGGTTTGATTTGATACTTCTAATACTTTTAATACAGATTTCTGACAACTACagatactctgtctctctctctctctgtctctctccctctgtctcttcctctctgtctctccctctctgtctctctccctctgtctctccctctctgtctctctccctctgtctctccctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812389 lncRNA upstream 2684 2766913 ~ 2767609 (+) True G1583235
TU1812384 lncRNA upstream 12054 2757846 ~ 2758239 (+) True G1583230
TU1812123 lncRNA upstream 36146 2705981 ~ 2734147 (+) True G1583039
TU1812351 lncRNA upstream 39566 2729831 ~ 2730727 (+) True G1583212
TU1812284 lncRNA upstream 56954 2518122 ~ 2713339 (+) True G1583163
TU1812357 lncRNA downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812358 lncRNA downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812360 lncRNA downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812364 lncRNA downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812414 lncRNA downstream 15134 2826826 ~ 2831680 (+) True G1583243
XR_005037626.1 mRNA upstream 139 2737086 ~ 2770154 (+) True LOC118941408
XR_005037627.1 mRNA upstream 607031 2154571 ~ 2163262 (+) False LOC118941409
XR_005037617.1 mRNA upstream 893977 1875632 ~ 1876316 (+) True LOC110497256
XM_036955457.1 mRNA upstream 920957 1830544 ~ 1849336 (+) True LOC118941531
trnaq-cug-118 mRNA upstream 950321 1819901 ~ 1819972 (+) True trnaq-cug-118
XM_036953909.1 mRNA downstream 77271 2888963 ~ 3003056 (+) False LOC118941397
XM_036953916.1 mRNA downstream 95125 2906817 ~ 2908914 (+) False LOC118941401
XR_005037624.1 mRNA downstream 188130 2999822 ~ 3000856 (+) False LOC118941407
XM_036953927.1 mRNA downstream 220781 3032473 ~ 3091701 (+) False LOC110517772
XM_036953926.1 mRNA downstream 221047 3032739 ~ 3091701 (+) False LOC110517772
TU1812046 other upstream 569420 2198928 ~ 2200873 (+) True G1583003
TU1811023 other upstream 1168560 1582091 ~ 1601733 (+) True LOC118941396
TU1811015 other upstream 1205624 1561505 ~ 1564669 (+) True LOC110510959
TU1810907 other upstream 1811847 810245 ~ 958446 (+) True G1582090
TU1810551 other upstream 2719102 48547 ~ 51191 (+) True LOC110516050
TU1812361 other downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812362 other downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812365 other downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812367 other downstream 2182 2813874 ~ 2815294 (+) False G1583215
TU1812368 other downstream 2182 2813874 ~ 2815294 (+) True G1583215

Expression Profile