RNA id: XM_036953927.1


Basic Information

Item Value
RNA id XM_036953927.1
length 5110
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110517772
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3032473 ~ 3091701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGACTTCTGCTTTTGACGGTTCGTCACATTTCACGTTGACATCGAGCGAATACACGCCACCGTCCATAAACACACACGGATCAAAAATATTACCGACTGGTCGCAGTTCGGGAATACAGTAGAGACCGTAGCGTGTATTTAAAGaaagAAAGATTTTCTGGTGAGGAAACCGGGGAATACAGAGAACGACAGAAAAGAAAACGAGGAAACCACCAAAAGGAAATGCCAATCGCAGCCACGGGTCAACTGACGACTCAGGAACCCTGTATTTTCTCCCGACTGCCCTCCACCCCGGAGCCTGTACCAAAAGGGGGTAATTTATGTGACGTTGCGGGGGCAGTAGCCGAGTCGCAGGAGCGAACAGAATACGGGGGCGCCGAGGGGGGCAGGGGAGGAATAGTAGCCAGCTACAGTCAGACCAGCGGCGCTAGGGGATTTCTGCCGCTTCGTTCTTCCAACTCCAACGGTTCTCCTCCGCAATCCCCTCCCACGTCCTCCCCCCTCGCCTCATCTTTCTTCCATCACCACCCCTATCAAATGGCCATGGAGCCGCCCAGGACTCGATCGCGTTCTCGGTCTGGATTCTACCAGCAGTATGGTGCGACCGGCCCCGGGATTAATGCCAACGGGGGAAACGGAcctaaccaccatcaccaccatcaccacagcCAGCagcaacaacatcatcaacagcAGCACAACTCTGGTTGCTCACCCCTTGGAGCTCACAGCCACCACACGGAGCAGCACAGCATACGAGCCCCGGGATCTAACGTCTCCCCCGGCGCTCAGAGGCAGTCGGGACCGCCTGGAGCACATCGCATCTCACCCGCAGGAGCCGTAGGGGGTAGGAGCCATCCTGACCATGCCTGTGGAGAGGAGGGTGACAAGAATGAGGACAGCCCCAGTCCAAAGCGTCAGAGACTATCTGGCCAATCAGTGCTGGATCTCTCCACAGTGGCcccaccctccaacccctctccACCAATGAGGCCGTGGGAGCTGCCCCACAGTCGCAGACCTCCCCCTAACCCCCACCCCCATTACCACCAGGAGCGCTGCCATACACctgtcagacacagacacagtcctccagcgCGTCGCCAGCGTGGCCGTCTCTCCCGCACCCCCCgtcacctcccccctcctcctccccaccacccctcccctcctcccccctccatccgaCTGGACCCCCAGGACCAAAGCTACCGCCACCACTACCCTCATCCCCACCAGAGCTActctcacccccctcctcccccctacgGCCAGCCCCCAGCCCCTGCCGGTGGGGGCGTGGAGGAGCCTCGAGCGTTCCACCCCCCTGCCCTGTCTCCACGGTTACTGCACCCCGCTGTCCATCATTCTCATCAAGCAGCTCACCACCACACACAGCAGCAAGGAGCCATGGTCATGGACCTTCATGAACAGGCCTCAGTCCCAGTCTCCTATACGGTGACTCCTGTCCCTTCTCATCATGGTCTGGTAGCTCCTCTGTATACAGGACAGCACCTCCCTCCTGTCTGTTCCTCTCAACAACAGATCCCAGCATGCAGTGTGGTCTTCAGTACAGGACAACACTACCACCCTatgctGGGGGCGTGTTCGGTGCAGCATTTACCAGTGCCCtactcctttccctccctcctctccaatgatcctcctttcctcctcccccctccccacctctctcaccacccccctcacctccctccaCCTGGACACTTCCTTCCCTTCCCGACACAACAGTCCAGATCGCCGTTGCAGAGGATAGAGAACGAGGTGGAGCTGCTTGGAGAGCACCTGTCTGTGGGAGGGGGGTTCAACTACCCTCATGGAGgacaccacccctcctccctggccccctccacacccctccagtTCCTGTCTCATCACGACTCCCTGTCACAGGAGCTGTTCGGAGTGcCGTACCCCCACTTCATGCCTCGGCGAATCACAGGGCGTCGTTACCGCTCCCAGCAGACCGTGCCCCCGCCCCCCTACCACCCAGGCTTCCTGCCTTACTTCCTGTCGATGCTTCCAGTGGGCCCTACAGTCGGTCCTACCATCAGTCTAGAGTTAGATGTGGatgatggagaggtagagaactATGAAGCCCTGTTGAACCTAGCAGAGCGTCTGGGCGAGGCTAAACCCAGAGGACTGACCAAGGCTGACATAGAACAACTTCCCTCCTATCGCTTCAACCCCAACAACCACCAATCAGAACAGACACTgtgcgtggtgtgtatgtgtgacttTGAGTCTCGTCAGCTGCTAAGAGTCCTGCCCTGTAACCATGAGTTCCACACCAAGTGTGTTGACAAGTGGCTGAAGgctAACAGAACGTGTCCCATCTGTCGGGCGGACGCCTCCGAGGTCCATCGGGATTCTGAATGACCTATGACCTCGAGCcccacagatctaggatccgCTCAGCCTCCCCACATCCTAACCTGACGCATTAGGGAGTGGAGGGAAACACAACAGGCCTTAGATCAGTGTCTTGGAGCAatgccccccccctcctccgCCAAGTGAACTCTTTAAGAAATAGACTCTGTCTTCTTCCTATGATTATGGTATTCTAATAATGGCCttttgactgacacacacacacacacacactcacacacacacgtacgagGGGCAGTTGGACTTTTCCCCCTTTTTGTACTGTCCTTACCTTCCTGAGTCATGATTGGAGTTGTCATATGAACGCTGTGGAGAAACTCGGACGTGTGTCGTtgtcctgactaacccagtgGAGGAAATGGAAGCCCAAAGATTCTGACCATTATGACATcatcattgttgttgttgttaatatgAATATTCTGGTGGTGATGAATCAGTCAGAACCTGGATTGAGATGTGTCTTCACTAGTGGGTTGTTATTTTGGTTTATTATTAAGGtgctttttcttcatttttatcaattttttttaaaatgtgtgtgCTGTTGCACTCCTACAAAACACATCTACAATGTGTGTCCAACTGAAACCGAGAGAGAACGGAGGACAACACAATCTTTACATTGTTGTTAGTGTTGGTTTATGATCTGGGTGGAGGAAGGTGTGCAGAAATATAGCGTTGTCAGTAATGGGGGAAGTGTGTTTGTATTTAGAACACCAGTGTGTATTATTTATGCAGTGCAGTACACTGGGCTTTCCGCTCTGATTGGTCGATGCTGTGCACTGAGACAGGAAGTGTTTCATGAGGAAGGGGAGGGGCTTCCAGGGAGGAGAAGGACAACAGAACCAGGGTAATTGAGGAAGGGGAGGGCCTTCTCTCTCATCACACCTCtcccactccatccctctctctctctctacttttctgTTCACTCACTCCATGTTTCAGAGAGATGGATCAGCCTCCGTTATCTctgcttactctctctctctcacacacacactgaatgcaCACCCCCCACGCAGCACAGGAGTGTGTGCGCGCTGATATGAATCGATGCTAAACGTCCGACATTTGTCTTATTGGTCAGTTGCTTAGGAAGAAATATGATAGTGGTTTCATTTGAGATTTGACCATCTCTTATCTATCTATCGACCAAAGTAATGAACTATCTGGAGAATAAGGGTGTCATTTTGAGATCCAACCAACGTTGTTTCACTGGTCGTTCAGATCACATTGAGAAGGTGAGATTATCTGAAGTTTAGTTTTAAGGcacaataataatgatgatgatgatgatgatggtgattgtAGTGTGGTAGTATCACAGTTAGGGTTTAACTCCTTGGTAAAAAAAAGGGACATGTGTTTTGCCTGTCGACCCACGAGTGAGAAGATCAGTGCCTGGTTTCACTCATTCGTTCACAATGACTCTTCTGTTCAGTATCCATTcatcccctcttcctcctgtaggatgcttctcctccccctttctctcggtCCCTTCTTcatcccctcttcctcctgtagGATGCttctcacccccctccccctttctctcggtCCCTTCTTCATCCCCCCTCCCCGTTTTCCACTGTGTCCTCTGTCTACCCAGTGTCTTTAGAAGTAGTCCTTAACTGCTGTCATAAGCCCTACATAAGGCTGTCTTAACATGCACAATGTCACCCTATGTCAAGTTCATGTCCTGGCTTCCTACTGTCCTTCACCCACACGGTGTCACGATTCACGTTCTATGTCAGGCTCACAGCAACCTTAAGTAGGGCCTTACGACAGTCTTATGTAGGCCTTACGACAGTCTTATGTAGGGCCTTACGACAGTCTTAAGTAGGGCCTTACGACAGTCTTAAGTAGGGCCTTACGACAGTCTTAAGTAGAGCCTTACGACAGCTAGTAGAAGGGGAAGGTTGTATTAAACCATGTCAGCCAGGCACCTGCAGTGTCCTAATATCTAAGAGATGCCTTTTTAAACCCCAGATTGACCCTCCTTAAAGCCATGTCACCAGTAGGTATGTTAATGACCTTTTAGATCAGCGTTTAGCTGGGACAAGGTCTTCACCCTACATGATGAAAATAAACCATTCTCTCCAGTGTCCAATGTTGCCCAGCTCTGCGATTTaaggctaaaaaaaaaaaaaaaagttattggcCGTAGCCATGGCAACAGGGTTTGAAAAAGCTTCCGTTCtcctgttctgtttttttttttgtttcctggTTTAAAGGTGTTATACTGTCGTCATGGCGTCCATTGTGTGTCGTAGGATTCTAATTATTGTTATTGTTTCTCCTGCTTGGTACACGACTAGCAGTTACCTCATTGTCTCGATGTATATTCAGATACAAATATAGGACATTCTGAATTCAGCTTTTCATATTGTTTATTTTTTCCTCATACCATTTGTCCTTGGGTTGTTTTAAAAAACAAAAGTTATCATTTATTAACATGACGTCGGTAGCTTTCTTCTCCATAATGTATCATATCTGTAACCAAAATCATTTTGAAGGCTTTGATATTGCAAATTTTTAACAAACATTTGTACATTTTTAATGAGAGTTATTAATAGTGAGGCGTTACTAAGTGGTGAAATGAATTGTTATTTTTAATCCCTGTCCCCAGTCTTTTTGGATTTCAAAGGCTGCTTCTATAATAAATGTAGAATTGCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812899 lncRNA upstream 23518 3007739 ~ 3008955 (+) True G1583609
TU1812440 lncRNA upstream 30553 2951647 ~ 3001920 (+) True LOC118941407
TU1812446 lncRNA upstream 48562 2876427 ~ 2983911 (+) False G1583261
TU1812476 lncRNA upstream 71872 2913936 ~ 2960601 (+) True G1583276
TU1812500 lncRNA upstream 74570 2957416 ~ 2957903 (+) True G1583294
TU1812963 lncRNA downstream 3724 3095425 ~ 3097219 (+) True G1583648
TU1812964 lncRNA downstream 4462 3096163 ~ 3096961 (+) False G1583649
TU1812965 lncRNA downstream 4462 3096163 ~ 3096538 (+) True G1583649
TU1812980 lncRNA downstream 5902 3097603 ~ 3101021 (+) True G1583653
TU1812983 lncRNA downstream 12789 3104490 ~ 3104806 (+) True G1583655
XM_036953909.1 mRNA upstream 29417 2888963 ~ 3003056 (+) False LOC118941397
XR_005037624.1 mRNA upstream 31617 2999822 ~ 3000856 (+) False LOC118941407
XM_036953916.1 mRNA upstream 123559 2906817 ~ 2908914 (+) False LOC118941401
XM_036955460.1 mRNA upstream 220781 2770293 ~ 2811692 (+) False LOC110518136
XR_005037626.1 mRNA upstream 262319 2737086 ~ 2770154 (+) True LOC118941408
XM_036953928.1 mRNA downstream 13698 3105399 ~ 3119992 (+) False LOC110510463
XM_036953929.1 mRNA downstream 13698 3105399 ~ 3128798 (+) False LOC110510463
XM_036953932.1 mRNA downstream 44947 3136648 ~ 3139833 (+) True LOC110511406
trnae-cuc-282 mRNA downstream 130217 3221918 ~ 3221989 (+) True trnae-cuc-282
trnae-cuc-283 mRNA downstream 130398 3222099 ~ 3222170 (+) True trnae-cuc-283
TU1812241 other upstream 141667 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 141745 2889026 ~ 2890728 (+) False LOC118941397
TU1812365 other upstream 217179 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 341015 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 341015 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 391945 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 526137 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 548948 3640649 ~ 3642876 (+) True G1583951

Expression Profile