RNA id: TU1812933


Basic Information

Item Value
RNA id TU1812933
length 447
lncRNA type sense_over
GC content 0.50
exon number 2
gene id LOC110517772
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3032473 ~ 3091701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAGTCGGTCCTACCATCAGTCTAGAGTTAGATGTGGatgatggagagGCCCTGTTGAACCTAGCAGAGCGTCTGGGCGAGGCTAAACCCAGAGGACTGACCAAGGCTGACATAGAACAACTTCCCTCCTATCGCTTCAACCCCAACAACCACCAATCAGAACAGACACTGTGAGTAGAGTCCCTTCAACCACCAATCAGAACAGACACTGTGAGTAGAGTCCCTTCAACCCCAACAACCACCAGTCAGAACAGACACTGTGAGTAGAGTCCCTTCAACAACCACCAGTCAGAACAGACACTGTGAGGAGTCCCTTCAACAACCACCAGTCAGAACAGACACTGTGAGGAGTCCCTTCAACAACCACCAATCAGAACAGACACTGTGAGTAGAGTCCCTTCAACAACCACCAATCAGAACAGACACTGTGAGTAGAGTCCCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812959 lncRNA upstream 1575 3083076 ~ 3083289 (+) True G1583644
TU1812958 lncRNA upstream 3526 3081025 ~ 3081338 (+) True G1583643
TU1812899 lncRNA upstream 75909 3007739 ~ 3008955 (+) True G1583609
TU1812440 lncRNA upstream 82944 2951647 ~ 3001920 (+) True LOC118941407
TU1812929 lncRNA downstream 3219 3089534 ~ 3091429 (+) True LOC110517772
TU1812963 lncRNA downstream 9110 3095425 ~ 3097219 (+) True G1583648
TU1812964 lncRNA downstream 9848 3096163 ~ 3096961 (+) False G1583649
TU1812965 lncRNA downstream 9848 3096163 ~ 3096538 (+) True G1583649
TU1812980 lncRNA downstream 11288 3097603 ~ 3101021 (+) True G1583653
XM_036953909.1 mRNA upstream 81808 2888963 ~ 3003056 (+) False LOC118941397
XR_005037624.1 mRNA upstream 84008 2999822 ~ 3000856 (+) False LOC118941407
XM_036953916.1 mRNA upstream 175950 2906817 ~ 2908914 (+) False LOC118941401
XM_036955460.1 mRNA upstream 273172 2770293 ~ 2811692 (+) False LOC110518136
XR_005037626.1 mRNA upstream 314710 2737086 ~ 2770154 (+) True LOC118941408
XM_036953928.1 mRNA downstream 19084 3105399 ~ 3119992 (+) False LOC110510463
XM_036953929.1 mRNA downstream 19084 3105399 ~ 3128798 (+) False LOC110510463
XM_036953932.1 mRNA downstream 50333 3136648 ~ 3139833 (+) True LOC110511406
trnae-cuc-282 mRNA downstream 135603 3221918 ~ 3221989 (+) True trnae-cuc-282
trnae-cuc-283 mRNA downstream 135784 3222099 ~ 3222170 (+) True trnae-cuc-283
TU1812930 other upstream 13221 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 194058 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 194136 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 269570 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 346401 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 346401 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 397331 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 531523 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 554334 3640649 ~ 3642876 (+) True G1583951

Expression Profile