RNA id: XM_036953932.1


Basic Information

Item Value
RNA id XM_036953932.1
length 2500
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC110511406
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3136648 ~ 3139833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagagagaacatcacaGATAGTTTCTCATTCAGCTCGAGGAAGAAACAGCCCAGCCGCACATCGCGGTTTGAGTGACACAGATACCGGTTTACATTTACAGGTTTACAGCACAGACGGAGCGAGAGATTGGAACcgagagggatagacagggagagagagatataatggaAAGAGTGGAGAAATAAATATTggattaataaaaataaaaaatacaccaACGGAGGACTATTTTTTCGCCTCTCACATGAATGGGAACAGCGGGATACGATATGGAGTCTCGTGAGCTATTTTCTCAGTGTGTTTGATTGACACACTTTTCCCACCGCTGAACATCTGACGGTGGAAGGGACGAGGCCATGCATAACGCCAGCCACCGCCTGGCAGAGAACCAGAGCGAGCCTCATCTGCCCGAGCCACACGCGGATTTACCCGCCACTCGCGCGCTCGTCGGCTGCGTCCTCTCACTGCTCATCCTCTGGACGTTACTGGGTAACTTCACGGTGTGCGCGGCGGTTCTGCGTTACCGGCACCTGCGCGCCAAAGTCACCAACATCTTCATCGTGTCCCTGGCGCTGTCGGACCTCCTCGTGGCGCTGCTCGTGATGCCGTGGAAGgcgGCGGCAGAGGTGGCGGGGTTCTGGCCCTTCGGTGCGTTCTGTGACACCTGGGTGGCGAGCGACATCATGTGTTCCACGGCGTCCATCTTGAATCTGTGCATGATCAGTGTGGACCGCTACTGGGCGATATCCAGCCCATTCCGTTACGAGAGGAGAATGAACCGCCGCGTGGCCTTCGTCATGGTCGGCGTGACCTGGACGGTCTCCGTGATGATATCATTTGTGCCCGTTCAACTCCACTGGCACCGGGCTGCGATCACCGGAAACGCCGGGAGCGGTGACGAATTTAACCGGGACGTTACCTGGTTTAACGTCAGTGGGGTGTATCAACTCCGCAGGGCCTCGGAGGAGGTGAACGGCTGGAACTGTGACTCAAGTCTGAGTCGGACCTACGCCATCTCCTCCTCGTTGATCAGTTTCTACATCCCCGTGGCGATCATGGTGGTCACCTACACACGGATCTACCGGATCGCCCAGGTCCAGATACGCAGGATATCCTCCCTGGAGCGAGCCGCAGAACACGCACAGAACTGCCGCTCGGACCCGCACGTGGATGTGGATGCAGATGGGCACGTGCACGCTTTCCACCATCGTCATCCTCCTCTTCGTTCTAAACACCGTTGCTCCATCTTTCACCAAACGACCCcgaaacatcatcatcatcaccctgaTCTTCCTCCTCAACACCGGGCCCTGAGGTACTCCATTAGGAAGGAAACCAAGGTTCTGAAGACTCTGTCTGTCATCATGGGGGTCTTCGTCTTCTGCTGGTCCCCCTTCTTCATCCTCAACTGTGCCATGCCCTTCTGCCCAGGTCCAGGTACAGCCTCTAGAACTGTGTCAGACCCCTCGTCCCAATCCTCCCACCTGTACTGTGTCAGTGAAACCACCTTCGACGTCTTCGTGTGGTTCGGTTGGAGCAACTCTTCCTTAAACCCCGTTATCTACGCCTTCAACACTGAGTTCCGCGAGGCGTTCCTCCGCTTGCTGGGTTGCCGTGGGGACAACGGGTGCTTTGGCGGCTGGACGACGAGTGCCACGCGCGTGGAGAGCGTGGTCTTGGCGAGCAACGACGCCGCCGGGAAGGAGAAGAAGAACTCGCTCTTCGCAACGGAGATGGGCGTGGCTTACGATACCGGCTGTGCCGCCGGTAGAGGTAGTGTCACATCTGGTGTAATCCGCGACCCGGTTAGAGGGAGGGTGCTACCGACACCGTTAACGGACCGTAGAGGAGCTGTAGAGGAGCCGCTGTGTGACTGTGAGGTGGACCCGGTTAGAGGGAGAGGGGACAGCGGGGCAGGTCTCTCTAGGATGCCACCGGCAACGTTAACGAACCGTAGAGGGACGATAACACAACCAGAGGCGGAGTGCGACTGTCCCGCGGAGGATTGTAAAAGAGAAGCAGCGGACCGGGGACAACGGACTCAAATGATTCCCTCACAAACTTTCTGATTAACTTTCAAACTGTGCCAAACTGACCGTACCGTTGATGTCTGTAGTCGTTTCATTTCAAATGAATCCACAACTTGTACTGTCTCAGCTGTTCATGGATCACATTCATCCAGGAAATAGCTATGACAGGTTTATCCAAAACATTCATTGGACAATTTGATGAAAAAGCATTTGAGGATTGATTGAAACAGGGCCATTTCCCACCAATGCTCTAGGCTAAGGTTTCTCCAGCTCTCGTTCCTGAACCCACAAAAGCTCTGTAATATGTTGTTGATCTGACCTGTTTTTATGGAAGTGGTGCCTCAAGGAGAAAAGGATATTAATAGTAATGgtaatgatagtaatgatagtaatgatagtaatgatagtaacgatagtaatgatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1812971 lncRNA upstream 16754 3118237 ~ 3119894 (+) True LOC110510463
TU1812986 lncRNA upstream 22384 3113982 ~ 3114264 (+) True G1583658
TU1812983 lncRNA upstream 31842 3104490 ~ 3104806 (+) True G1583655
TU1812980 lncRNA upstream 35627 3097603 ~ 3101021 (+) True G1583653
TU1812963 lncRNA upstream 39429 3095425 ~ 3097219 (+) True G1583648
TU1813004 lncRNA downstream 14046 3153879 ~ 3154202 (+) True G1583675
TU1813023 lncRNA downstream 52059 3191892 ~ 3193229 (+) True G1583686
TU1813187 lncRNA downstream 150424 3290257 ~ 3290466 (+) True G1583783
TU1813223 lncRNA downstream 173226 3313059 ~ 3314801 (+) True LOC110534750
TU1813240 lncRNA downstream 183749 3323582 ~ 3372508 (+) True G1583811
XM_036953929.1 mRNA upstream 7850 3105399 ~ 3128798 (+) False LOC110510463
XM_036953928.1 mRNA upstream 16656 3105399 ~ 3119992 (+) False LOC110510463
XM_036953927.1 mRNA upstream 44947 3032473 ~ 3091701 (+) False LOC110517772
XM_036953926.1 mRNA upstream 44947 3032739 ~ 3091701 (+) False LOC110517772
XM_036953925.1 mRNA upstream 44947 3032740 ~ 3091701 (+) False LOC110517772
trnae-cuc-282 mRNA downstream 82085 3221918 ~ 3221989 (+) True trnae-cuc-282
trnae-cuc-283 mRNA downstream 82266 3222099 ~ 3222170 (+) True trnae-cuc-283
trnae-cuc-284 mRNA downstream 83480 3223313 ~ 3223384 (+) True trnae-cuc-284
trnae-cuc-285 mRNA downstream 83662 3223495 ~ 3223566 (+) True trnae-cuc-285
trnae-cuc-286 mRNA downstream 84438 3224271 ~ 3224342 (+) True trnae-cuc-286
TU1812930 other upstream 65005 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 245842 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 245920 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 321354 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 292883 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 292883 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 343813 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 478005 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 500816 3640649 ~ 3642876 (+) True G1583951

Expression Profile