RNA id: trnae-cuc-365


Basic Information

Item Value
RNA id trnae-cuc-365
length 72
RNA type mRNA
GC content 0.65
exon number 1
gene id trnae-cuc-365
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3283983 ~ 3284054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccctggtggtctagtggttaggattcggcgctctcaccgccgcggcccgggttcgattcccggtcagggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813023 lncRNA upstream 90754 3191892 ~ 3193229 (+) True G1583686
TU1813004 lncRNA upstream 129781 3153879 ~ 3154202 (+) True G1583675
TU1812971 lncRNA upstream 164089 3118237 ~ 3119894 (+) True LOC110510463
TU1812986 lncRNA upstream 169719 3113982 ~ 3114264 (+) True G1583658
TU1812983 lncRNA upstream 179177 3104490 ~ 3104806 (+) True G1583655
TU1813187 lncRNA downstream 6203 3290257 ~ 3290466 (+) True G1583783
TU1813223 lncRNA downstream 29005 3313059 ~ 3314801 (+) True LOC110534750
TU1813240 lncRNA downstream 39528 3323582 ~ 3372508 (+) True G1583811
TU1813227 lncRNA downstream 67774 3351828 ~ 3354825 (+) True LOC118941411
TU1813246 lncRNA downstream 78597 3362651 ~ 3363004 (+) True G1583817
trnae-cuc-364 mRNA upstream 968 3282944 ~ 3283015 (+) True trnae-cuc-364
trnae-cuc-363 mRNA upstream 1966 3281946 ~ 3282017 (+) True trnae-cuc-363
trnae-cuc-362 mRNA upstream 2974 3280938 ~ 3281009 (+) True trnae-cuc-362
trnae-cuc-361 mRNA upstream 3155 3280757 ~ 3280828 (+) True trnae-cuc-361
trnae-cuc-360 mRNA upstream 4204 3279708 ~ 3279779 (+) True trnae-cuc-360
trnae-cuc-366 mRNA downstream 110 3284164 ~ 3284235 (+) True trnae-cuc-366
trnae-cuc-367 mRNA downstream 1139 3285193 ~ 3285264 (+) True trnae-cuc-367
trnae-cuc-368 mRNA downstream 1320 3285374 ~ 3285445 (+) True trnae-cuc-368
trnae-cuc-369 mRNA downstream 2349 3286403 ~ 3286474 (+) True trnae-cuc-369
trnae-cuc-370 mRNA downstream 3391 3287445 ~ 3287516 (+) True trnae-cuc-370
TU1812930 other upstream 212340 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 393177 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 393255 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 468689 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 148662 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 148662 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 199592 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 333784 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 356595 3640649 ~ 3642876 (+) True G1583951