RNA id: XM_036953938.1


Basic Information

Item Value
RNA id XM_036953938.1
length 2175
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110534763
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3314868 ~ 3317441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAACATTTGATTGCTTTTTAGCAGGAGCAACATACAATATGATTCAGCAGCAGGTGGCAATGTTGGAACATAAGTCGTATGTGTAAGCAACCTTTATTTTGAAAAGCCAGCCTTTATTTCGGAGAAATTATCCAGGAAGTAGCCGAAAAATGTTTGTTTATAAAAAATAGTCTAACGTCTATGGCCTTAATTGTGTAGTCTCAAGACGTTGACTGAGCACTTAGTTTCAAATTACTATAACATAAGTGTTTAACATAAACATAGTGCTAAGGACATGTACGATACAGTCGCCTTTAACGCTCAGCTAGCCTCCATCGTCGAGGTTTTGGCGAATGCAGCCGTTGCCGAAATCTGCAAACTTGTAGATGACGGCCATGCTGCTTTACGTTTGGAAATTTCCCATAGCCAGAAAGAAATCGATAACCTGCGGAGGAAGCTGCTTTTGACAAAATTCCAGAATTCTCGACGAAGCGCAGAGAAATTCGGAGCCCTCCGACACACTGTCAGCAGGCGGGACACAGATCTTGTTAGCCGGGCAAGAGGGAGCTTCCAAGTGGAGAATCGCTGTGCCGAGCGTAAAGGGAGAAATTTTACGCAGGATGCCACCAACTGGAGAGACGCAGGACGCACAGCGACAGACAAGGATGTGGGCATGCCGATGGCAGATATGCAAGAGATGCCTCTTATCAAAATGGAGAACCTTGGCACCAGCAGCCCGGAAGAGATTGTCCAACTGGTCAGTGAGAGCAGTGAGAAGATCATTGTGCCAGAACCAGGTTCTTCATCATCTACTGAACCTACAGACCTTCTGGACCAGCAGGGCAACAGACACAGAGCTCCAAACACCTCACTCAATATAGAACCTGAAAACCAGACGTTCCAGCATCCAGCGTCACAATACAGCAGAGCAAGACAGGACCATCAGGTTGCTGAGGGTGTGACCTGGGACACTGACCATCAACCTATAGAATACAGCCTGTCCCATTGGACAGAGAACCAAGAGACTGACAACTCAACTGTGAATGCTCCTCATAATCTAGGGCCAGACTCCAAAAGGCTGTCTGAACatccagagaggagaggggtgcctGGTAACTCTGGGGTCTACATGTCTGCTTTGGGCTCTCTGGACTGGGTGCCTGATGTGGTGATGGTGGACTCAGTTCCCATTAAAGTGGAGGTAGATATGAGTTCAGAATGGAGCATAACTGGCCAAGAGGCGACATCTGGAGAGGTTTGTTCAGAAAGCAGGCAGCTTGTGGAcaacagaggaagagggggaatgGAGTCTGGACAGACAAAGTGTCCCCCTGACACTCAACATGCAGAGCAAGGGACAACTGTAGGATCAAGGTCCAAGATGCCGGATTTCAATGGACTGTCCACCAAAAACAGCTTTTCATCCCCAAGGGTTACTCTCCACCAGGTTCCCCAAAGAAGGAAGCCAGTCAACTTCCCGAATTTCAACAGAGGCTCCACTTCTTCATCGAAAGGCATAGAAAAGCAGCCACAACAGCTGACGTCTCACTCCAGCCAGAGGCAGCTCCGGTGCAGCCTCTGCGGAAAGCCATTCCCCAAGCCGGCGCACCTGCAGAGGCACATGCGGGTCCATACAGGGGAGAAACCGTACGGCTGCAGCCACTGTACCAAGCGCTTCTCCCACAGCCACCAGCTGAAGATGCATGAGAGGGTCCACACCGGAGAGAAACCGTTTCAATGTGTCTACTGTGGGAAGTGCTTCACCCAGTCTGGCCACATGAAGAAGCATCTCCTTGTCCACACTGGTGGCAGGCCACAGGACATTGTGCTGCCCTGAGTGTtccagggtgaagtttcccctaggtacagatcttggatcagtttcctctccccaatcctaaccttaaacatttgtcctaaaaaaatgcagaactgccccaagatcagcatctaggggcaacttcacaaTAATGATAGGcagggccaggagttttcccTCACCATGTGACCAGACCAGGGAATAATTCCTGTCCCTAGTTGTAAGGGGAATGGCTCCACACTACGTTTTCATATGAAGACTGGGTCCGtgtgtttctgtattgttttattgGAGGTATTTACgttttgtttttcaatcaacaaacaaaacaatccacattcacagatgtggcagaaataaaaaataaactaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813223 lncRNA upstream 67 3313059 ~ 3314801 (+) True LOC110534750
TU1813187 lncRNA upstream 24402 3290257 ~ 3290466 (+) True G1583783
TU1813023 lncRNA upstream 121639 3191892 ~ 3193229 (+) True G1583686
TU1813004 lncRNA upstream 160666 3153879 ~ 3154202 (+) True G1583675
TU1812971 lncRNA upstream 194974 3118237 ~ 3119894 (+) True LOC110510463
TU1813240 lncRNA downstream 6141 3323582 ~ 3372508 (+) True G1583811
TU1813227 lncRNA downstream 34387 3351828 ~ 3354825 (+) True LOC118941411
TU1813246 lncRNA downstream 45210 3362651 ~ 3363004 (+) True G1583817
TU1813301 lncRNA downstream 60635 3378076 ~ 3378327 (+) True G1583840
TU1813302 lncRNA downstream 60931 3378372 ~ 3378600 (+) True G1583841
XM_036953933.1 mRNA upstream 43 3309693 ~ 3314825 (+) False LOC110534750
XM_036953807.1 mRNA upstream 6640 3303563 ~ 3308228 (+) True LOC110513657
XM_021596462.2 mRNA upstream 19337 3290812 ~ 3295531 (+) True LOC110519316
trnae-cuc-374 mRNA upstream 24751 3290046 ~ 3290117 (+) True trnae-cuc-374
trnae-cuc-373 mRNA upstream 24932 3289865 ~ 3289936 (+) True trnae-cuc-373
XM_036953936.1 mRNA downstream 7975 3325416 ~ 3329282 (+) True LOC110534757
XM_036953935.1 mRNA downstream 15141 3332582 ~ 3340957 (+) False LOC110534760
XM_036953934.1 mRNA downstream 22403 3339844 ~ 3344863 (+) True LOC110534760
XM_036953937.1 mRNA downstream 28907 3346348 ~ 3348947 (+) True LOC110534762
XR_005037629.1 mRNA downstream 32317 3349758 ~ 3355397 (+) False LOC118941411
TU1812930 other upstream 243225 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 424062 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 424140 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 499574 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 115275 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 115275 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 166205 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 300397 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 323208 3640649 ~ 3642876 (+) True G1583951

Expression Profile