RNA id: XM_036953937.1


Basic Information

Item Value
RNA id XM_036953937.1
length 1931
RNA type mRNA
GC content 0.50
exon number 4
gene id LOC110534762
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3346348 ~ 3348947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTAGCGTAACAAACGAGATGTGTGTGAAGTATATGCTATATGGTGTGAGCTGTGTCGTCTCATGACGTTGACTGAATACCCAAATGCAAATTACTTTAACATAAGTGTTTAACATAAAGGACATGTACGATACCGTCGCCTTTCATGCTCAGCTAGCCTCCATCATTGAGGTTTTGGCGAATGCAGCCGTTGCCGAAATCTGCAAACTTGTAGATGATGGCCATGCTGCTTTACGTTTGGAAATTTCCCATAGTCAGAAAGAAATCGATAACCTGCGGAGGAAGCTGGTTTTGACAAAATTCCAGAATTCTCGACGAAGCGCAGAAAGATTTGGACCCCTGCGACGCACAGTTCACAGGCGCGTTGACAGCGGTCATATTGTTCGGGGAAGAGGGAGCTTCGTAGGAAAGTCAACAGTGGAAAATCGTCTTGACGACAGCGATGGAGGCAACTTTATGCAGGATGTCACCAACTGGAGAGACCCAGGACTCACAGGGATAGACCAGGATGGGGGCATGCAGACGGCAGAAATGCAAGAGGCACCTCTTATCAAAATGGAGAACTTTCACACCAGCAGAACAGAAGAGATTGTCCAACCAGTCAGTGAGAGCAGTGAGAAGATCATTGTGGCAGAACCAGGTTCTTCATCCTCTACTGAACCCACAGACCTTCTGGACCAGCAGGGCAACAGACACAGAGCTCCAGACACCTCACTCAATATAGAACCTGAAAACCAGACGTTCCAGCATCCAGCGTCACAATACAACAGAGCAAGACAGGACCATCAGGTTGCTGAGAGTGTGACCTGGGAAACTGACCATCAACCCATAGAATACAGCCTGTCCCAATGGACAGAGAACCAAGAGACTGACAACCCAACTGTGAATGCTCCTCACAATTTAGGGCCAGACTCCAAAAGGCTGTCTGAACatccagagaggagaggggtgcctGGTAACTCTGGGGTCTACATGTCTGCTTTGGGCTCTCTGGACTGGCTGCCTGATGTGGTGCTGGTGGACTCAGTTCCCATTAAAGTGGAGGCAGATATGAGTTCAGAATGGAGCATAACTGGCCAAGAGTTGACATCTGGAGACATCTGTTCAGAAAGCAGACAGCTTGTGGAcaacagaggaagagggggaatgGAGTCTGGACAGACAAAGTGTCCCCCTGACACTCAACATGCAGAGCAAGGGACAACTGTAGGATCAAGGTCCAAGATGCCGGATTTCAATGGACTGTCCACCAAAAACAGCTTTTCATCCCCAAGGGTTACTCTCCACCAGGTTCCCCAAAGAAGGAAGCCAGCACCCTTCCTGAATTTCAGAGGCTCCACTTCTTCATTGAAAGTCATAGAAAAGCAGCCACAACAGCTGACGTCTCACTCCACCCAGAGGCAGCTCCGGTGCAGCCTCTGCGGAAAGCTCTTCCACCAGCCGGCGAACCTGCGGAGTCACATGCGGGTCCATACAGGTGAGAAACCGTACGGCTGCAGCCACTGCACCAAGCGCTTCTCCCACAGCCACCAGCTGAAGATGCATGAGAGGGTGCACACCGGAGAGAAACCGTTTCAATGTGTCTACTGTGGGAAGTGCTTCACCCAGTCTGGCCACATGAAGAAGCATCTCCTTGTCCACACTGGTGGCAGGCCACAGGACGTTGGGCTGCCCTGAGGGGAGTTTTTCTACACCACGTGACCAGACCAGAGAAAAACTGGTCTTCCACCCTAGTTGTAAGGGGAATGGCTCCACACTACTGGGGTTTTCATATGAACACTGGGTCCATGTGTTTTTAACAGTTTGCATAGATACCACATTGAACGCTTCCCtctgtgtgtagtggttgtgttttcAGTTCAGCTGGCTTGATACTTGGTCCAGAGTGAACTGATAATGTATATTATTAAAGGTGAAGATTTTAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813223 lncRNA upstream 31547 3313059 ~ 3314801 (+) True LOC110534750
TU1813187 lncRNA upstream 55882 3290257 ~ 3290466 (+) True G1583783
TU1813023 lncRNA upstream 153119 3191892 ~ 3193229 (+) True G1583686
TU1813004 lncRNA upstream 192146 3153879 ~ 3154202 (+) True G1583675
TU1812971 lncRNA upstream 226454 3118237 ~ 3119894 (+) True LOC110510463
TU1813227 lncRNA downstream 2881 3351828 ~ 3354825 (+) True LOC118941411
TU1813246 lncRNA downstream 13704 3362651 ~ 3363004 (+) True G1583817
TU1813301 lncRNA downstream 29129 3378076 ~ 3378327 (+) True G1583840
TU1813302 lncRNA downstream 29425 3378372 ~ 3378600 (+) True G1583841
TU1813291 lncRNA downstream 42405 3391352 ~ 3392600 (+) True G1583830
XM_036953934.1 mRNA upstream 1485 3339844 ~ 3344863 (+) True LOC110534760
XM_036953935.1 mRNA upstream 5391 3332582 ~ 3340957 (+) False LOC110534760
XM_036953936.1 mRNA upstream 17066 3325416 ~ 3329282 (+) True LOC110534757
XM_036953938.1 mRNA upstream 28907 3314868 ~ 3317441 (+) True LOC110534763
XM_036953933.1 mRNA upstream 31523 3309693 ~ 3314825 (+) False LOC110534750
XR_005037629.1 mRNA downstream 811 3349758 ~ 3355397 (+) False LOC118941411
XR_005037628.1 mRNA downstream 2239 3351186 ~ 3355396 (+) False LOC118941411
XM_021573316.2 mRNA downstream 8865 3357812 ~ 3361295 (+) True LOC110497283
XM_036953950.1 mRNA downstream 57526 3406473 ~ 3414777 (+) False LOC110497278
XM_036953948.1 mRNA downstream 57708 3406655 ~ 3457336 (+) False LOC110497278
TU1812930 other upstream 274705 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 455542 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 455620 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 531054 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 83769 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 83769 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 134699 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 268891 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 291702 3640649 ~ 3642876 (+) True G1583951

Expression Profile