RNA id: XM_036953951.1


Basic Information

Item Value
RNA id XM_036953951.1
length 2488
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110534752
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3416203 ~ 3445744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATCACATGAAAGTGATGAGGAACAGGAAAAAAATAATCTCaacagcaagctaacgttacaaacaaagctagctagctatcgatGTTCAGTCTCCGATATTATTGTATTTGTTTGAATAGCTTGCTAGACAACTATATATCGTCATAATATAGAAAACATAAAGACTGTTTTTATATTGAAAAGGGGCCAAAAGCGTCGGGGGACAATGTCGGGTTCCGTGGTCGAGTTCCAGGCGCAGATAGCCTCAATCATGGAGGTGCTAGCCAACGCGGCTGTAACCGAAATCTGCAAAGTTGTTGACGATGGCTATGCGGTTGTACACATGGAGATGTCCCAAAGCCACAAGGAGAACGAATTTCTCCGGAGGAAAATGAAATTGATGGAACTTCAGATCGCGAGGTTTCGAGCTGAGAGAACAAAGTTGTCAGAGGGGTCCGTCCAAAATCGCTTTCATGGAATACGCCTCCTAAACAGACACAACCATCGAGAGACTGCAACGACagGACCTACATGGCAAAGCAGAGCCAGACTTTCCAACAGGAGTTTTGGGAACAGCAGCATTCAAAGAGACAGACAGCCCATAGACGTGGACCAAGACGATGTCTCTCCATCAAAGCATATGGATGCTACAAGTGatgagCAGTcagcagagacagaggaagggcaACCAGACCTGCTGATCATCAAGGTGGAGGGAGAAGCTGATGACCAGGACTCTAGGATCAGCCACCCAGGTAGAACAGTggagggcagcagagaactaaccACCCAACCGGCTGCAGCCACCACAGAGGACTTCGCCTTCCCCAGaggcaacaacaactacaacaccGCTATGGAGCAGTcagcagagacagaggaaggggaaCCAGACCTGCTGATCATCAAGGATGAGGGGGAAGCAGATGACCAGGACTCTAGGATCAGCCACCCAGCTAGAACAGTggagggcagcagagaactaaccACCCAACCGGCTGCAGCCACCACAGAGGACTGCGCCTTCCAGCCCAGAGGCAAcatctacaacaacaactacaacaacaccgCTATGGAGGTCAGTGGATCTGACGCCATCCTCCTCCAATCAGAAACAGGGACTGTGAACCAGGGACCCCAACAGCACACAGGATTTGAACccaaagcagagagacagagtctgGACACAAAGTGTGACATGAACGGGGACCTCAATCTCCTAAGAGATTCTTTAAACCAGGTGTGGAGAGAGGTAGTAGTGAATGATGATGGCGCCTCAGCTGCTCACACTAAAGTAATGGACCTAGGGAGTGGCCCAGTGGGCCCAGAAACACAGACTAGCTCAGACATAGAAATGAGAAGTGTAGGGTTAGAAAACCACAGGTTTTCCCCCAAGTCATTCCATTCTTCATCAGAACATGTGATAGTGATTGACTCTGTGTCCACTGGCCAGCAGGTAGATAGAGGTTTCGAGTGGGGTCAGGTGGCTACAACTACTACACCACAGGACAATGGGACTGGAAATAAACAGGGAGTGGGAGGGTTTAACAGAAATGCACCAATGATTCACCCCAAATCGATGAGAGACAACACAACGCTTTTGGTAGCACCTGGTTTCCATCCTACAGAGAAAAATACAGGCATTCATCTTGACACAGGAAATGCAAGTGAGGCCAACAAAGATAGTTGGTCTTCATTGGCAAGCTTCCATAGACACTCTGAAATACCAGGAAGAGGAGTTCAACAACCAGTTCCTGCCTCACTTCCTGACGGCTATTTTAGACCAAGCGCCACAACTTTCTCTCACTCCAGTAATTTCGCCTCACACTTTAGACCTGGCACCGTAGAACGACCGTACGGTTGCCCGAGCTGCCATAAAAAGTTTATCCACGAGAGCGACTTACAGCATCACATGACCATCCACACCAGGAAGCGGGCGTTCGCCTGCATGTTGTGTGAGAAGAGCTTTGTGTCCCCCAGCAAGCTCCAAGTGCACCAGAACGTCCACACTGGGGAGAAGCCCTTCAGTTGTGCACAGTGCGGGCGCAGGTTCTCTCACTCCAGCAATCTGAAAAGACATCAGAAGCTTCATCATTGAGAAGCGACACAGAATCAAGAgattctatgtaaaaaaaaaaaaaaaagctatgtATTAGCATTATGTCAGTTCGTTTTATAGCAACACGCTGTGAAAGTCCTGCCTACTTCCTGGATCATGTACCTTGCTTTTTTTTATGGGATTCAAGAGTAAATAATCAAATTCGTGAAAACGCTGTCATTTGATATACATTTGggtccaaaagtatttggacagtgacacattttgttgttgttttggctctgtactccagcactttggtcATATTTCTGATTTTTATGCCGAAAAcactcactcatcattattcacgatttcattcatgattatctgcaatcatggtagcatccatatTAATGTGGACGTGTTTAGAAacacattctattcttatttacaataaaagtgactcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813291 lncRNA upstream 23603 3391352 ~ 3392600 (+) True G1583830
TU1813302 lncRNA upstream 37603 3378372 ~ 3378600 (+) True G1583841
TU1813301 lncRNA upstream 37876 3378076 ~ 3378327 (+) True G1583840
TU1813246 lncRNA upstream 53199 3362651 ~ 3363004 (+) True G1583817
TU1813227 lncRNA upstream 61378 3351828 ~ 3354825 (+) True LOC118941411
TU1813275 lncRNA downstream 12563 3438912 ~ 3444191 (+) True G1583825
TU1813290 lncRNA downstream 36321 3462670 ~ 3462924 (+) False LOC110497285
TU1813256 lncRNA downstream 43462 3469811 ~ 3470376 (+) False LOC110497285
TU1813257 lncRNA downstream 43462 3469811 ~ 3470512 (+) False LOC110497285
TU1813259 lncRNA downstream 43462 3469811 ~ 3470625 (+) True LOC110497285
XM_036953950.1 mRNA upstream 1426 3406473 ~ 3414777 (+) False LOC110497278
XM_021573316.2 mRNA upstream 54908 3357812 ~ 3361295 (+) True LOC110497283
XR_005037629.1 mRNA upstream 60806 3349758 ~ 3355397 (+) False LOC118941411
XR_005037628.1 mRNA upstream 60807 3351186 ~ 3355396 (+) False LOC118941411
XM_036953937.1 mRNA upstream 67256 3346348 ~ 3348947 (+) True LOC110534762
XM_036953958.1 mRNA downstream 4694 3431043 ~ 3436809 (+) False LOC110534752
XM_036953954.1 mRNA downstream 4696 3431045 ~ 3436809 (+) False LOC110534752
XM_036953960.1 mRNA downstream 4698 3431047 ~ 3445744 (+) False LOC110534752
XM_036953949.1 mRNA downstream 21722 3448071 ~ 3457336 (+) False LOC110497278
XM_021573308.2 mRNA downstream 21755 3448104 ~ 3457336 (+) True LOC110497278
TU1812930 other upstream 344560 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 525397 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 525475 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 600909 2813874 ~ 2815294 (+) False G1583215
TU1813281 other downstream 6367 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other downstream 6367 3432716 ~ 3435612 (+) True LOC110534752
TU1813330 other downstream 57297 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 191489 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 214300 3640649 ~ 3642876 (+) True G1583951

Expression Profile