RNA id: XM_036953954.1


Basic Information

Item Value
RNA id XM_036953954.1
length 3601
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC110534752
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3416203 ~ 3445744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttggttaagggcttctaagtaaggatttcacggtaatgtctactacacctgttgtattcggcgcatgtgacaaatacaatttgatctgatttcTATTGTGTACAAAATAATCTgtaaaacaaccaaaacaaactgcaaatgcatccaacaagtagAGTCACACGTTTGATGAAGGCAGGAATATCACACAAATAGGATCAATGGTTCATTTGATAGAAGACAACCTATCTTGACATTGTCAAGTATTGAAATCTGGCACGAATCCCAGACTTTTTTTTGCGATCAAAAAGTCATATTTCTCTTAATTTCCAATGTAGTGAGAGTGGTTTTATCGCAATGGTACATCATACCGGCCAAATGTCTACCTTCTTGAACGGCAATAGCTCCTATACACATGAAAACGCCTTACCCCTGGTATCGATAGAGCATCGCtcacacaaaaacaataaaacattCAAAATTGATGAATCTTTCCTGTAAAGCTTACAGCCTGTAATTTAACCTcctagtcattgtatcattttaaatctaaagtgctggagtacagagcctaaacaacaacaaaacatgttcACTCTCCAAATACCTTTGGACCTCACTATAAACAGGCAAAGGTGTGGGAATCATGTTGGACATATTGGAATCAGAATAAAATAGATTTACACCAAAACAGTCTTTATGGGCTTAAGTGTTTTACATCATTCtaaaaaaataatcaaatttACTTAATTCATACATTAACCACCATCAAATGATATTATTGCACCTATATTGGATTTTGGACACCATATTGGATTTGAGGTCAAATCTAGGGTGCCTTCAAAAATAATCTGTGGTTTAATTACATGAGTAGGGGCATAAGATACAAAATCCTTCAAGGAACCGTGGACCCAAAATGTTTAATTTTGATGTCTAAGCCCACTTGTTTTCTTTAGAGCCGATTACAAtagccacaacaacaacaacatcgtgTAACTATGTATTTTTATCAGGCAGGACCAAACAGAGCTGAATGAGAGCGATGACTTGGGAAGTTGTCTATTATTCAGCTACCAAAAAGTGTACATTCGTCATAAATATTAATAGTTGATATTTCCACCTATTGTATCTCTGCGTTTACAGTTCTATATTTCCAAGATCCATTAAGATATCCTGATGCTGTTTGCCTGTGTATGTGGGGCAGACAGCAAATATTGGGTTACATATGGTTATGTGGGAATGCCACTTCCAGCCAGGCATTATTGTGCACTTTTCTTAGTTTAAGGCGTTTGTCACAATATCTATCAATTAACCACTTCTTCTGCAAAATAATTTTACACAATCACCCATTTTAATAAATGACAGCCATTATAGATGtggaaaaaacatgttttgtaaTAGCTCGGGTAGTCCCCAACATTTTTGGGGCCACAAGCCTCGTTTTTTTTATTACTTAGCTACAACGTTGTTGTGATGGAGAACTCCTGTACAGTAGATGGCGGTGTTAAACTTTAATTGCACAGTCCAGCATAATGATGAAAAGGAAAGAATCACCGGCTACAAACAAAGCTAGCGATGTTTCGTTTCTGATAGGATTGCCTTTATTTTAATAGCAAACTAGACCCTGtagattattataatattatagaaAACACAAAGACTGTTTTCATATTGAAAAGGGGCCAAAAGCTTCGGGGGACAATGTCGGGTTCCGTGGTCGAGTTCCAGGCGCAGATAGCCTCAATCATGGAGGTGCTAGCCAACGCGGCTGTAGCCGAAATCTGCAAAGTTGTTGACGATGGCTATGCTGTTGTGCACCTGAAGATGTCCCAAAGCCACAAGGAGAACGAATTTCTCCGGAGGAAAATGAAATTGATGGAACTTCAGATCGCGAGGTTTCGATCAGAGAGAACAAAGTCTTCAGAGGGGTCCGTCCACAATCGCTTCCATGGAATACGCCTCATAAACAGACACAACCATCGTGAGACGGCAACGACAGGACCTGCTTGGCAAAGCAGAGCCAGACTTTCCAACAGGAGTTTTGGGAACAGCAGCATTCAAAGAGACAGACAGCCCATAGACGTGGACCAAGACGATGTCTCTCCATCAAAGCATATGGATGCTACAAATGATGAGCAGTcagcagagacagaggaaggggaaCCAGACCTGCTGATCATCAAGGATGAGGGAGTTGCAGACGACCAGAAATCTAGGTCCAGCCACCCAGCTAGAACAGTggagggcagcagagaactaaccACCCAACCGGCTGCAGCGAACAGCAAGGATCCCACCTTCCAGCTCAGTGGCCCCAGAggcaacaactacaacaacaccgCTATGGAGCAGTcagcagagacagaggaaggggaaCCAGACCTGCTGATCATCAAGGTGGAGGGAGAAGCAGATGACCAGGACTCTAGGATCAGCCACCCAGACAGAACAGTGGAGGGCAGTAGAGAACTAACCACCCAACTGTCTGCAGCCACCACAGAGGACCCCGCCTTCCAGTCCAGTGGCCCCAGAGGCAACAACAATTACAACAACATCGCTATGGAGGTCAGTGGATCTGACGTCGTCTTCCAATCAGAAACAGGGAATATGAACCAGGGACTCCAGCAGTACACAGGATTTGAATCCAGAGCAGAGAGACCGAGTCTGGACACTAAGTGTGACATGTACGGGGGCCTCAATCTCCTAAGAGATTCTTTAAACCAGGTGTGCAGAGAGGTAGTAGCGACTGATAATGGAGCATCAGCTGCTCACACTAAAGTAATGGACCTAGGGAGTGGCCCAGTGGGCCCAGAAACACAGACTAGCTCAGACATAGAAATGAGAAGTGTAGGGTTAGAAAACCACAGGTTTTCCCCCAAGTCATTCCATTCTTCATCAGAACATGTGATAGTGATTGACTCTGTATCCAGTGGACAGCAGGTAGATAGAGATTTTGAGTGGGGTCAGGTGGGTACAGCTTCTACACAGGTCAATGGGACTGGAAATACGCAGGGAGAGGGAGTGTTTGAGAGGAACGCACCTACGATGGCAAGCCTCCATAGACACTTTGAAATACCTGGAAGAGGAGTTCAACAACCAGCTCATACCTCACTTCCTGTCGGCCATTTTAGACAAAGCGCCACAACTTCGTCTCACTCGAGTAATCTTGCCACACACGTTAGACCGGACACCATAGAGCGATTGTACGGTTGCCTGAGCTGCCATAAGAAGTTTGTCCACGAGAGTGACTTGCGGCAGCATGTGGTCGTCCACAACAGAAAGCGGGCGTTCGCCTGCACCTTGTGTGAGAAGAGCTTTATGTCCCGTACCGATCTCCAAATGCACCTGAATgtccacactggagagaagcccttCAGTTGTGCACATTGCGGGCGCAGGTTCTCCCACTCCAGCAATCTGAAAAGACATCAGAAGCTTCATCATTGAGAAATTGGACAGAAGCAAGAGATTCCTATTGAAAAAAGCTGTTATAGCAATATCATGGGTTCAAACTTGATTtgttctacagtgcattcgggaagcattcaatctgtacacactaccccataatgacaatacaaaacaggttatacatttgtgtgtgtgtgtatgtgtatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813291 lncRNA upstream 38445 3391352 ~ 3392600 (+) True G1583830
TU1813302 lncRNA upstream 52445 3378372 ~ 3378600 (+) True G1583841
TU1813301 lncRNA upstream 52718 3378076 ~ 3378327 (+) True G1583840
TU1813246 lncRNA upstream 68041 3362651 ~ 3363004 (+) True G1583817
TU1813227 lncRNA upstream 76220 3351828 ~ 3354825 (+) True LOC118941411
TU1813275 lncRNA downstream 2103 3438912 ~ 3444191 (+) True G1583825
TU1813290 lncRNA downstream 25861 3462670 ~ 3462924 (+) False LOC110497285
TU1813256 lncRNA downstream 33002 3469811 ~ 3470376 (+) False LOC110497285
TU1813257 lncRNA downstream 33002 3469811 ~ 3470512 (+) False LOC110497285
TU1813259 lncRNA downstream 33002 3469811 ~ 3470625 (+) True LOC110497285
XM_036953951.1 mRNA upstream 4696 3416203 ~ 3426349 (+) False LOC110534752
XM_036953952.1 mRNA upstream 4696 3416203 ~ 3426349 (+) False LOC110534752
XM_036953953.1 mRNA upstream 4696 3416203 ~ 3426349 (+) False LOC110534752
XM_036953955.1 mRNA upstream 4696 3416203 ~ 3426349 (+) False LOC110534752
XM_036953956.1 mRNA upstream 4696 3416203 ~ 3426349 (+) False LOC110534752
XM_036953949.1 mRNA downstream 11262 3448071 ~ 3457336 (+) False LOC110497278
XM_021573308.2 mRNA downstream 11295 3448104 ~ 3457336 (+) True LOC110497278
XM_036953963.1 mRNA downstream 20613 3457422 ~ 3462567 (+) False LOC110497286
XM_036953964.1 mRNA downstream 20650 3457459 ~ 3462567 (+) False LOC110497286
XM_036953962.1 mRNA downstream 21550 3458359 ~ 3462567 (+) True LOC110497286
TU1812930 other upstream 359402 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 540239 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 540317 2889026 ~ 2890728 (+) False LOC118941397
TU1812367 other upstream 615751 2813874 ~ 2815294 (+) False G1583215
TU1813330 other downstream 46837 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 181029 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 203840 3640649 ~ 3642876 (+) True G1583951
TU1813473 other downstream 251359 3688168 ~ 3690984 (+) True LOC118941415
TU1813928 other downstream 625859 4062668 ~ 4063226 (+) True G1584344

Expression Profile