RNA id: XM_036953965.1


Basic Information

Item Value
RNA id XM_036953965.1
length 6023
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110497287
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 3471763 ~ 3481543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAAATTCTTTACGATATAAccaattatgactttgtggcgGTGGTAACCTCGTCAGCTGTCCGGAACGAAACTGCTAAAACCAACTCAATTGTTCCGCAAGTAGTTAATTTCCTAGTTCACTCCTGTAAACTCCTGTAGCCATGTCTTTCGAACTCGCCTTTCGTAGTCGTGTTGCCTCCATTATGGAAACTTTGACAGCAACAGCCTTGCAAGACATCTGTCAACTTATGGGAGAAACCTATGCTGCTCTTCGAGTGGAAATGGTGCATGAACAAAATCAAAGTTCGAGGACAAAATTGCAGGAGATGGAGAATGGGACAGGGGTGGAGAATCCAGCGAACTGCATGGAGCGCATTCATAAACTCAGTGAGAGTTTGAGAAACTTCCCAGTTGTCGAGCAAATCCTCAATGAACAAGAGGCCAATGGTCTTTGGCTAGAAGGTGATCCTACTGTGGAAGACGAAGGTCCACCCTCACTGGTACCAGAAGGAGAAGAGCCAGCACAGCCTCTTAGTCAGACAACAGACATGGCTGTCTTttggaagggggtggagacatgGCCTGCACCACCGGTCATCAAACAGGAGGAAATGGATGACGACGACATGGAGTCTCAAGCGTACGACAAGTGGATTCCAGTGACACACTGGGCCAATCAGAATATCACAGGAGAAAGTGACGAGCAAGAGAGAAGTCAATCATCTGGGGGATCCAAAGAACTTGGACTTGACGACTTCAAGACGGAACCGAGTCCGTTGCTGGTGTCAGCTGAGGATGCTGCTCCACCCATAAAGAAGAAATATGATAAAAGGTACACCTGTGAAATATGTGGAAAGACTGAGAACAAGAAAGCCAGAATGACGAGTCACATGCGAAAGCACACAGGGTTGCCCTTTAACTGCGATATCTGTGGCGAGAAATTCCAGTGTCAGAAATTATTGACCAGACACAAGCGCTTCAATCACTACACAGGGATCATCTACAGTTGCTCTGTGTGCGGAAAAACGTTCATGCAGGTCACATCTCGCGACACACATGAGCGTGGTCACACTGGAAAAAACTATTGGTGCTCAGACTGTGGCGAGACATTCAAGGAGCGCCAGGAACGCGACACACATGAGTGCATTGTTTACAAGGGAGACCGGCCCTTCAGCTGCTCCGAGTGCAACAAGGACTTTGAAAGGCAGTACCATCTCAAAAAACACCAGCTAGAAAAACACTCTCTAATGGTGGAGCAGACTGTCGAACCAGAACCTGAGTCCAAGGACATTGAGGACCAACAGAGTCAGTTTGAATCTGAGAGTTCTGAGGCACCCACACATTTCACCTGTGACATATGTGGAATGACTATTATGAATAAAGGCAACATCAACAGACACATGTTAACACACACAAAGAAGCCCTTTAGTTGCGATATCTGTGGTGAGAATTTTAAGCGCAAAGCCCAATTCACCCGACATCAGGGCAAACACGCGAAAGTTGAGGAGAAAGTAGAAAAACCCTACAGTTGCACTGTGTGCGGAATGATGTTTGTGTATTCTAAAATGCGCAACAACCATGAGCGCAAACATATTGGAGAAGACTATTGTTGTTCAGACTGTGGCAAGAAGTTCAAGGAGCGTCAGGAGCACGAGTGCATTGTTTACAAAGGAGACCAGCCCGTCAGATGCTCCGAGTGCAATGAGGACTTTGAAAGGCAGTACCATCTCAAACAACACCAGCTGGAAAAACACCCTCTATTAGTGGACCAGACAGTCGACCCAGAACCTGAGTCCAAGGACATTGAGGACCAACAGAGTCAGTTGTTTGAGTTAGCGGAGAGTTCTGAGACTGAGGCACCCACGCGTTTCACCTGTGACATATGTGGTATGATTATTATGAATAAAGGCAACATTAACAGACACAAGTTAATACACACAAAGAAGCCCTTTAGTTGTGATGTCTGTGGTGAGAATTTTAAGAGCCACACCTGTTTAGCCAAACATCAAGGAAAACACAAGAGTGTTGAGGAGAAAATAGAACCATACAGTTGCTCTATGTGTGGAATGAGGTTTGTATTTCCTAAAATGCGTGACAACCATGAATGCAAACACATTGGAGAAGACTTCTGGTGCTCAGGATGTGACAAGACGTTCAAGGAGCGAGGGGATCGCGATGAGCACAAGTGCACTGTTTACAAGCGAGACCGACCCTTCAGATGCTCAGAGTGCAATGAGGACTTTGAAAGGCAGTACCATCTCAAAAGACACCGGCTGGAAAAACACCCTCTAATGTTGGACCAGACACGTCCCGGTCATGATACTGCGACGGTAGTACAGGGAGCACAGCCTTCAAATGACAATGACCCTAAGGCCGATATGAGTACGTTAGGTGGAAAAGTTCCAGTAACAAACTCAGGTTAAGTTGACACAAGTGAAATGGCTTCAACTGAATTAAGTTGTTTTGTTCAGTACAAAAAGGATAGACATGGATTTGAACGAAGGGGTGACGGATAGCGTTGGAAATAGTGTGTAGAACAGTGATGGGACTGAGATTCAACCCCACACAGGCAGGATATCGCATCTCTGACCTTTACTGCACAACTAACTTCAGGCACctggataatgttttacagccaTCTTTAATGCTCATGTTGGGCCTAGATTCGATCTGGACTGTTACAGCGTGCTTCACGTTTCAAATTACATTTCCGATTGATCCAAAATATGCAGCATTTAACGTGAATAGACTGATTCCCAAACCACCCCCTCACCCCTACCAACTCACTCGGAGGGCCCTCCGTTGTCACGTGTTGTTGTCAACTCCCGAGGGTGACTTCCAAAGAGAGGCGAGGGGATCAATAAACTGTCTACTTCAGGACACACTTGTGGGTATACTGATGATTTGTCTGGACTTGTGGTTtgtttacatagcaggttaggagaactaacgcagccggttaggataattaacgtagtaggttaagaaaagggttagagttaggcttaactaaaatgctacagttgtcaaCAAATAGATGGAGCTGTAGGTCTACTCCGTCTAGCCACAACCATCAGCTAtgtcaggggttcccaaacccagacacccccccccccccccccccccccccttccaacaTTGTGGAACATCCTGTGCCCCACTTCTATTTTCTAAGTATATTTCTCTGTTCACACTTCCCTTGATGGCGGGGAgaattttgcaggtttaaagctcATTTTTCGTATTCTATACATTTAGCCAAATGAGTGTGTTAATGCGATATGAGTGACTAAAACATTACAACAATCTATGGCCTGAAAACGTCTTGACAGAAAGGGTTGTATTAGAGTTGTTAATAAAAATGGAATTGAGAAATATTTGTGACTGTGGTTTCAGTAAcagcatttattttttaaaggttTGTCAACTCGATATGTTCTTGTTTATTGAGAGGAATAAAAGTGTAAAAACCTGTATCGTTTGGTTTTATTTAGCAAATCGAGGAGGCAGATAAACGAGTGTTTATGGTATATCACCGGTGCAACCTCGTCAGTTGTCCGGAACCAAACGTCTATCAGCAATTCAAACACTCCAACAGTAACTTAACACTGCAAACTTCGCGTGGTTAGTGAGTTTTGTAGCCATGTCTTTCGAACTCGCTTTTGGTTCTCGTGTTGCCTCCATTATGGAAGCTTTGACAGAAAAAGCCGTGCAAGACATCTGCCAACTTATGGGAGAAACGTATGCTGCTCTTCGAGTGGAAATGTTGCAAGAACAAAATCAAAGTTCGATAAAGTTACAGGCGATTGCAAATAACATCGAGAAGGAGAAGCCAGCGAACTGCATGGAGATAATTCAAAAACCAGCTTCCCCAACAGGTTTGAGAGACTTCCCAGTCGTGGAGCAAATCCTCAATGAACAAGAGGCCAATGGTCTTTGGCTAGAAGGTCACCTTACTGTTGAAGACCAAGGTCCACTGTCACTGGTACCAGAGGAAGAACAGCCATCACAGGCTTTTGGTCAGATGACAGACATGggggtggagacatgGCCTGCACCACCTGTCATAAAACAGGAGGAAATGGATGATGACGACATGGAGTCTCAAGGTTATGGCAAGGATATTCCAGACACTCACAAGGCCAACCAGAATATCACAGGAGAAAATGATGAGGAAGAGAGAAGTCAAGCCTCTGGGGGATCCAGAGAACTTGGACTCGATGACTTCAAGAGAGAACAGATTCCATTGCTGGTGTCAGCTGAGGATGCTCCAGCACCCACGAAGAAGAAATGTAATAAAAGGTACAGCTGTGAAATATGTGGAAAGACCGAGAGAAAAAAACACAGAATGACAAGtcacatgataacacacacaggGCTGCCCTTTAGCTGCGATATCTGTGGTGAGAAATTCAAGTTTCAGAATTACTTGAACAGACACCAGCGATCCAAACACACAATGAAAACCTACAGTTGCTCTGTGTGCGAAAAAACCTTCCGGCAGGCCACATCTCGCGACAGGCATGAGCGTGGTCACGCTGGAAAAAACTATTGGTGCTCCAACTGTGGTGAGATGTTCAGGGAGCGCGGGGATCGTGACGCGCACGAGTGCATTGATTACAAAGGAGAACGTCCCTTCAGCTGTTCCGAGTGCAGTGAAGCCTTTCAAAGGCAGTACCATCTCAAAAGACACCAGCTGGAAAAACACTCTCTAATGGTGGAGCAGACTGTCGACCCAGAAAATAGAGTTGAGGAGAAAAGTGAAAAACCCTGCAGTTGCTGTGTGTGTGGAATGATGTTTGTATATCCTAAATCGCGGGACACCCATGAACGTAAACACATTGGAGAAGACTACTGGTGCTCAGGATGTGGCAAGACGTTCAAAGAACGCCAGGGTCGCGATACGCACAAGTGCACTGTTTACAAGGGAGACCGGCCCTTCAGATGCTCCGAGTGCAATGAGGACTTTGAAAGACAGTACCTTCTCAAAAGACACCAGCTCGAAAAACACCCTCTAATGGTGGACCAGCCACATTCCAGTCATGATACATTGTTTTgtatggtttaaaaaaaaataatgaccATGCCCAGACCTAACTGCTCACACCCCCCTCAGCCCCTGCCTCAAACTCCACCGTTTTTTCTGTCTCCATTGTTCAACATttatttacattgtaatacttctgacagcacACTTTCTAACTCTGCCTGTAACCTTTGGATTTTATAGCATTCCCAGAAGGTATGGATTGTCAATTTTAAATattattcattactacatttagctaacattagatagttattCTAGAGATTCTTACCCTTGCCTTGATTCGGCATTCCAGATCATCATGGTATTTGTAGTTTATGATCCACATTAGCaactaattagcatttcatttagAGGGGGGGGCTGTTGTGTGAAATTGCACCAATTCAATAACTCTGTGCCTTGTGATTTCACTTTGCTCTGAAGCTGCCAGTGTTGCTGTAATGGAGGATCTAATTAATTAGCAGGTTAGAAAgactaatgtagcaggttaggagaatgaggTTAAGAAAAGGGATAGTTAGGTTTAGCTTATCCATCTAGCCACAACCATCAGCTTTGCAAATAAACCATAAGTCCCGACAAACCATCCAGAGGAGTCTGacgggaggatggctcataatagaATGTAATTTGCtactattccactccagccattaccacaagcccatcctccacaattaaggtgccaccaaccaccTGTATAACACCGGTCTTAATTGATTTTAGGGTGTATTGTGTTACCTGAAATTGTGTGTTGTTTTGAATATTGATTTGCTTTAGCAACATTGGATTTTCCCTTTTCATGTATATAaactttttttaattttttaaaatctggACAGCAAGGATTGTGGAAGAACAGTTGATCAAAAGGAAGGAAATTATATTTTTCTTGACTCATCAGGGGTTTCAGtaacagtatttttttttaaaggtttgtCAACCCAATATGTTGCTTTCTGAGAGGAATAAAGATTTTTTTCAACCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1813323 lncRNA upstream 1077 3470797 ~ 3471025 (+) True G1583862
TU1813259 lncRNA upstream 1477 3469811 ~ 3470625 (+) True LOC110497285
TU1813257 lncRNA upstream 1590 3469811 ~ 3470512 (+) False LOC110497285
TU1813256 lncRNA upstream 1726 3469811 ~ 3470376 (+) False LOC110497285
TU1813290 lncRNA upstream 9178 3462670 ~ 3462924 (+) False LOC110497285
TU1813337 lncRNA downstream 1524 3483048 ~ 3483258 (+) True G1583873
TU1813355 lncRNA downstream 37389 3518913 ~ 3520091 (+) True G1583891
TU1813357 lncRNA downstream 42511 3524035 ~ 3524339 (+) True G1583893
TU1813363 lncRNA downstream 55843 3537367 ~ 3537790 (+) False G1583898
TU1813362 lncRNA downstream 55944 3537468 ~ 3537790 (+) True G1583898
XM_036953943.1 mRNA upstream 1544 3462658 ~ 3470558 (+) False LOC110497285
XM_036953972.1 mRNA downstream 1835 3483359 ~ 3492477 (+) False LOC110497289
XM_036953971.1 mRNA downstream 1838 3483362 ~ 3492477 (+) False LOC110497289
XM_036953973.1 mRNA downstream 1881 3483405 ~ 3488777 (+) False LOC110497289
XM_021573326.2 mRNA downstream 11218 3492742 ~ 3498731 (+) True LOC110497290
XM_021573345.2 mRNA downstream 25780 3507304 ~ 3516455 (+) True LOC110497299
TU1813281 other upstream 36490 3432716 ~ 3435612 (+) False LOC110534752
TU1813282 other upstream 36490 3432716 ~ 3435612 (+) True LOC110534752
TU1812930 other upstream 400459 3032519 ~ 3071643 (+) False LOC110517772
TU1812241 other upstream 581296 2889284 ~ 2890806 (+) False LOC118941397
TU1812242 other upstream 581374 2889026 ~ 2890728 (+) False LOC118941397
TU1813330 other downstream 2122 3483646 ~ 3485420 (+) True LOC110497289
TU1813430 other downstream 136314 3617838 ~ 3622788 (+) False LOC110497294
TU1813447 other downstream 159125 3640649 ~ 3642876 (+) True G1583951
TU1813473 other downstream 206644 3688168 ~ 3690984 (+) True LOC118941415
TU1813928 other downstream 581144 4062668 ~ 4063226 (+) True G1584344

Expression Profile