RNA id: XM_036953989.1


Basic Information

Item Value
RNA id XM_036953989.1
length 1567
RNA type mRNA
GC content 0.56
exon number 10
gene id LOC118941416
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4380122 ~ 4385135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGTCAGAAAGCAAATTCAGTTGATGTGGAGCAGAAGacaagaaagaaggagaggggcacttcatccccctctccaatTCCATCTGACCGTTCTGAACGGAATGGCTCCGCTACCTCTGACCCCTCACCCTCTGAccaactctcctccctccatccacctccctctcctgttAAATGTTCCTCTCAGCCTTGCTCTCCTGCTAAACAACCCTCTGTACCCCGGTCACCTGCCAAAAACCCTTCCCCAGTGAATTCCTCTCCAGTGGTGTCCCACCCTAGTTCTCCCTCTCCTACCAACCCTCTGGACCGTCATGGAGACACCAGTCAGGAGGGCACAACAGTCAGaccTCTGTCTCTTCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGTCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAAGCATGACTCTTCCCAGGACCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCTTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCGTTCGGGTCTACCTGACAGTGTGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTTGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCACATGTACCAGCTGTGGGCGCGAGTCGTCTACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAGGTGGAGCAGTTCCACACACTGCCTCTTGTGCTGGTTCTGCATCTGAAGAGGTTTGGAGGACCTGGGGGGTTGGAGAAGCTGGAGGCTCCTCTTTTGTTTCCTTCGGAGCTGAGGCTCTCCACCCTCTGTGGGGACATGGTGCCACACCTGCACAGTGCCAGCCCACAGGCCCTCACCAACCAGGCCCCCAGCATCCAGGGGTCCATCCCCCAGACCCTCGCCAGCCAAGTCTCCAGCCCACCTGGAGCGGCAAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAGCCTCCAAACACTCAGACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814283 lncRNA upstream 48741 4331083 ~ 4331381 (+) True G1584673
TU1814278 lncRNA upstream 50710 4329195 ~ 4329412 (+) True G1584668
TU1814271 lncRNA upstream 56065 4323611 ~ 4324057 (+) True G1584661
TU1814037 lncRNA upstream 78319 4301589 ~ 4301803 (+) True G1584450
TU1814006 lncRNA upstream 126985 4252784 ~ 4253137 (+) True G1584419
TU1814330 lncRNA downstream 16725 4401860 ~ 4402232 (+) True LOC118941417
TU1814336 lncRNA downstream 33658 4418793 ~ 4419266 (+) True LOC118941418
TU1814344 lncRNA downstream 68863 4453998 ~ 4552127 (+) True G1584722
TU1814356 lncRNA downstream 101765 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA downstream 102029 4487164 ~ 4487616 (+) True G1584731
XM_036953988.1 mRNA upstream 150758 3912487 ~ 4229364 (+) True LOC110534570
XM_036953986.1 mRNA upstream 688110 3687991 ~ 3692012 (+) False LOC118941415
XM_036953977.1 mRNA upstream 757330 3609578 ~ 3622792 (+) False LOC110497294
XM_036953978.1 mRNA upstream 759256 3609581 ~ 3620866 (+) False LOC110497294
XM_021573345.2 mRNA upstream 863667 3507304 ~ 3516455 (+) True LOC110497299
XM_036953990.1 mRNA downstream 15525 4400660 ~ 4404928 (+) False LOC118941417
XM_036953991.1 mRNA downstream 33566 4418701 ~ 4423685 (+) False LOC118941418
XM_036953992.1 mRNA downstream 33566 4418701 ~ 4423685 (+) False LOC118941418
XR_005037632.1 mRNA downstream 33566 4418701 ~ 4423685 (+) False LOC118941418
XM_036955461.1 mRNA downstream 50672 4435807 ~ 4442006 (+) True LOC118941534
TU1813928 other upstream 316896 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 689138 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 737246 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 757334 3617838 ~ 3622788 (+) False LOC110497294
TU1813330 other upstream 894702 3483646 ~ 3485420 (+) True LOC110497289
TU1814367 other downstream 163420 4548555 ~ 4549189 (+) True LOC110514758
TU1814555 other downstream 736856 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 736856 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 736856 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 1045162 5430297 ~ 5470223 (+) False LOC110497310

Expression Profile