RNA id: XM_036955461.1


Basic Information

Item Value
RNA id XM_036955461.1
length 2190
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC118941534
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4435807 ~ 4442006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTTGTTTCTGCTGGTGCAAAAAGCCTAGTTCTCCCTCTCCTACCAACCCTCTGGACCGTCATGGAGACACCAGTCAGGAGGGCACAACAGTCAGaccTCTGTCCCTTCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGTCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAAGCATGACTCTTCCCAGGACCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCGTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCGTTCAGGTCTACCTGACAGTGTGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTACCTGGGGGACACGCAACAGGACGCACACGAGTTACTTGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTTTACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCACATGTACCAGCTGTGGGCGCGAGTCGTCTACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAGGTGGAGCAGTTCCACACACTGCCTCTTGTGCTGGTTCTGCATCTGAAGAGGTTTGGAGGACCTGGGGGGTTGGAGAAGCTGGAGGCTCCTCTTTTGTTTCCTTCGGAGCTGAGGCTCTCCACCCTCTGTGGGGACATGGTGCCACACCTGCACAGTGCCAGCCCACAGGCCCTCACCAACCAGGCCCCCAGCATCCAGGGGTCCATCCCCCAGACCCTCGCCAGCCAAGTCTCCAGCCCACCTGGAGAGGCCAAAGACAGCGCCCTCTGCTGTTCAGAAGCAGAAGCCAGTACAGTCAGTGAATGGTTACTACCAGCTGACTGGCGTAGTCTCTCATTTGGGAGGCTCCGCAAACTCCGGGCAATAGAGCGGGAGGCCCCAGCACACAGGGCCTAACAGGGCCACCAGCATCAGCCCCAGCCTAAACAGGGGCAGCACCTGGACCAGCCTCAaaacccccagcccagcctcaacAAAGGCAGCATCTGGACTAAGAAAATCCCATTTAAGATAATTCTGTTGACCGTTGTAACTCTTTAACTCAGGAAGATTTATGGTCTGGAATTCAGGCCGGTCCTAACAGGAAACGTGACAAAGGGAAGCAGCTGTAATGGAGCCTTCTAACACCCAATCAGGTCTGGAGGAGGAATGTCACAAAGATTCAGAGATGCTATGAGTATCTTTTGAAGTTACTCTCCAGTTGTATCCATCTGAATAAATACAGACATGAAAATGCTGGGCTACGGATGTGACCTTGGTTCTGTGAGTAGAGTAACAGGTCACCAAACAAGCTATGGGACAAGCTCAACCAAGCACAGCTAAAGTATGTGTGTTTTACAGCAGATTTCCTCTTTAATACCAATGAATACACTTAAAGCATTCATCTATTTGCATGATTGAAGGTAAAATCATAAAAAAAAGTGCTTCCACTGTGACTTGATATCAGTTAGCATTTTTCAGTGTTttcagtcgtgtgtgtgtgcgtgtgctcaaATACAGTAACTTCTACTTCTAACCTCAACTCTAATATACGTCTGTACCTGTGTCTTCTCCCTGCACTGATTAATATTTTGGGTCCCAACCCCTAATGTGTCTCTACCTGAATTAATGCTGTCATTGAATGGGCGGTATAGACCTCTGGatctctgaactggttttgacctttgcctgttttctggactccattcccgcctgcctgaccattctgtctgccctgacctcgagcctgccgcCAGTCTGTACCTCTGGatctctgaactggttttgaccttttgcttgTCCATGACTATTATCTTGCCTTCCCCCTTTGGATTGTTAATAAATATCTTGGgctcgaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814336 lncRNA upstream 16541 4418793 ~ 4419266 (+) True LOC118941418
TU1814330 lncRNA upstream 33575 4401860 ~ 4402232 (+) True LOC118941417
TU1814283 lncRNA upstream 104426 4331083 ~ 4331381 (+) True G1584673
TU1814278 lncRNA upstream 106395 4329195 ~ 4329412 (+) True G1584668
TU1814271 lncRNA upstream 111750 4323611 ~ 4324057 (+) True G1584661
TU1814344 lncRNA downstream 11992 4453998 ~ 4552127 (+) True G1584722
TU1814356 lncRNA downstream 44894 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA downstream 45158 4487164 ~ 4487616 (+) True G1584731
TU1814316 lncRNA downstream 78911 4520917 ~ 4800849 (+) True G1584698
TU1814381 lncRNA downstream 134361 4576367 ~ 4599810 (+) True LOC118941536
XM_036953991.1 mRNA upstream 12122 4418701 ~ 4423685 (+) False LOC118941418
XM_036953992.1 mRNA upstream 12122 4418701 ~ 4423685 (+) False LOC118941418
XR_005037632.1 mRNA upstream 12122 4418701 ~ 4423685 (+) False LOC118941418
XM_036953990.1 mRNA upstream 30879 4400660 ~ 4404928 (+) False LOC118941417
XM_036953989.1 mRNA upstream 50672 4380122 ~ 4385135 (+) True LOC118941416
XM_036955462.1 mRNA downstream 6496 4448502 ~ 4451077 (+) True LOC110515142
XM_036953808.1 mRNA downstream 9124 4451130 ~ 4453904 (+) True LOC110514540
XM_036953993.1 mRNA downstream 67169 4509175 ~ 4512950 (+) True LOC110512119
XM_036955463.1 mRNA downstream 103955 4545961 ~ 4551255 (+) False LOC110514758
XM_036955465.1 mRNA downstream 129738 4571744 ~ 4576538 (+) False LOC118941536
TU1813928 other upstream 372581 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 744823 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 792931 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 813019 3617838 ~ 3622788 (+) False LOC110497294
TU1813330 other upstream 950387 3483646 ~ 3485420 (+) True LOC110497289
TU1814367 other downstream 106549 4548555 ~ 4549189 (+) True LOC110514758
TU1814555 other downstream 679985 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 679985 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 679985 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 988291 5430297 ~ 5470223 (+) False LOC110497310

Expression Profile