RNA id: TU1814367


Basic Information

Item Value
RNA id TU1814367
length 299
RNA type TUCP
GC content 0.54
exon number 3
gene id LOC110514758
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4545961 ~ 4551255 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACGCACACGAGTTACTCGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCAAATGTACCAGCTGTGGGCGCGAGTCGTCTACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAGGTGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814356 lncRNA upstream 60820 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA upstream 60939 4487164 ~ 4487616 (+) True G1584731
TU1814336 lncRNA upstream 129289 4418793 ~ 4419266 (+) True LOC118941418
TU1814330 lncRNA upstream 146323 4401860 ~ 4402232 (+) True LOC118941417
TU1814283 lncRNA upstream 217174 4331083 ~ 4331381 (+) True G1584673
TU1814381 lncRNA downstream 27178 4576367 ~ 4599810 (+) True LOC118941536
TU1814391 lncRNA downstream 42632 4591821 ~ 4592094 (+) True G1584760
TU1814433 lncRNA downstream 155568 4704757 ~ 4796239 (+) True G1584797
TU1814464 lncRNA downstream 245201 4794390 ~ 4794793 (+) True G1584826
TU1814520 lncRNA downstream 371604 4920793 ~ 4921499 (+) True G1584869
XM_036953993.1 mRNA upstream 35605 4509175 ~ 4512950 (+) True LOC110512119
XM_036953808.1 mRNA upstream 94651 4451130 ~ 4453904 (+) True LOC110514540
XM_036955462.1 mRNA upstream 97478 4448502 ~ 4451077 (+) True LOC110515142
XM_036955461.1 mRNA upstream 106549 4435807 ~ 4442006 (+) True LOC118941534
XM_036953991.1 mRNA upstream 124870 4418701 ~ 4423685 (+) False LOC118941418
XM_036955465.1 mRNA downstream 22555 4571744 ~ 4576538 (+) False LOC118941536
XM_036953994.1 mRNA downstream 56508 4605697 ~ 4610263 (+) True LOC110534951
XM_036955468.1 mRNA downstream 71952 4621141 ~ 4626449 (+) True LOC110533205
XM_036953995.1 mRNA downstream 77382 4626571 ~ 4628355 (+) True LOC118941419
XM_036955469.1 mRNA downstream 91446 4640635 ~ 4643443 (+) True LOC118941538
TU1813928 other upstream 485329 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 857571 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 905679 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 925767 3617838 ~ 3622788 (+) False LOC110497294
TU1813330 other upstream 1063135 3483646 ~ 3485420 (+) True LOC110497289
TU1814555 other downstream 572802 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 572802 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 572802 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 881108 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 899287 5448476 ~ 5448938 (+) True G1585375

Expression Profile