RNA id: XM_036953994.1


Basic Information

Item Value
RNA id XM_036953994.1
length 1336
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110534951
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4605697 ~ 4610263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acctgacaatgGCAACCAGTGAAATGTATTTCTGAGTTAGGTTGGCTTGTTTTCACAATTCACAACAAAATGCCTCCAGCTGTCCATCACCACTGTAAATATAAagagtggttatagaggAAAAAACGTCAGAAAGCAAATTCAGTTGATGTGGAGCAGAAGACAagaaagaagaaggagaagggcacttcatccccctctccaatTCCATCTGACCGTTCTGAACGGAATGGCTCCGCTACCTCTgacccctcaccctctgatcaactctcctccctccatccacctccctctcctgttAAATGTTCCTCTCGGCCTTGCTCTCCTGCTAAACAACCCTCTGTACCCCGGTCACCTGCCAAAAACCCTTCCCCAGTGAAATCCTCTCCAGTGGTGTCCCACCCTAGTTCTCCCTCTCCTACCAACCCTCTGGACCGTCATGGAGACACCAGTCAGGAGGGCACAACAGTCAGaccTCTGTCTCTTCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGGCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAAGCATGACTCTTCCCAGGACCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCTTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCGTTCAGGTCTACCTGACAGTGTGGCAAACCAGGCCTCAAAAGCAGACCTCATGGGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTTGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCACATGTACCAGCTGTGGGCGCGAGTCGTCTACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAGTCAGCACTTAGGGCTCAGCCCTGCATGTAGAGACTAACACCCAGGGCAAGCTGCCCACTGCCTCAGAATACGCTATCTTATTATTGTAGTGGTATCATTCATTATGTAATGCTTTTGTTTCTAACCAGAGTGAACAGGTTGAATTCACATGTGAGGGCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814381 lncRNA upstream 5887 4576367 ~ 4599810 (+) True LOC118941536
TU1814391 lncRNA upstream 13603 4591821 ~ 4592094 (+) True G1584760
TU1814344 lncRNA upstream 53570 4453998 ~ 4552127 (+) True G1584722
TU1814356 lncRNA upstream 117962 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA upstream 118081 4487164 ~ 4487616 (+) True G1584731
TU1814433 lncRNA downstream 94494 4704757 ~ 4796239 (+) True G1584797
TU1814464 lncRNA downstream 184127 4794390 ~ 4794793 (+) True G1584826
TU1814520 lncRNA downstream 310530 4920793 ~ 4921499 (+) True G1584869
TU1814567 lncRNA downstream 471756 5082019 ~ 5083416 (+) True LOC110498597
TU1814569 lncRNA downstream 478546 5088809 ~ 5090649 (+) True G1584906
XM_036955465.1 mRNA upstream 29159 4571744 ~ 4576538 (+) False LOC118941536
XM_036955463.1 mRNA upstream 54442 4545961 ~ 4551255 (+) False LOC110514758
XM_036953993.1 mRNA upstream 92747 4509175 ~ 4512950 (+) True LOC110512119
XM_036953808.1 mRNA upstream 151793 4451130 ~ 4453904 (+) True LOC110514540
XM_036955462.1 mRNA upstream 154620 4448502 ~ 4451077 (+) True LOC110515142
XM_036955468.1 mRNA downstream 10878 4621141 ~ 4626449 (+) True LOC110533205
XM_036953995.1 mRNA downstream 16308 4626571 ~ 4628355 (+) True LOC118941419
XM_036955469.1 mRNA downstream 30372 4640635 ~ 4643443 (+) True LOC118941538
XR_005037634.1 mRNA downstream 33781 4644044 ~ 4645739 (+) False LOC118941420
XR_005037633.1 mRNA downstream 33782 4644045 ~ 4645765 (+) False LOC118941420
TU1814367 other upstream 56508 4548555 ~ 4549189 (+) True LOC110514758
TU1813928 other upstream 542471 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 914713 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 962821 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 982909 3617838 ~ 3622788 (+) False LOC110497294
TU1814555 other downstream 511728 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 511728 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 511728 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 820034 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 838213 5448476 ~ 5448938 (+) True G1585375

Expression Profile