RNA id: XM_036955470.1


Basic Information

Item Value
RNA id XM_036955470.1
length 1099
RNA type mRNA
GC content 0.55
exon number 7
gene id LOC118941539
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 4697782 ~ 4700374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGACAAGAAAGAAGAAGGAGAGGGGcacttcatccccctctccaatTCCATCTGACCGTTCTGAACGGAATGGCTCCGCTACCTCTGACCCCTCACCCTCTGAccaactctcctccctccatccacctccctctcctgttAAATGTTCCTCTCAGCCTTGCTCTCCTGCTGAACAACCCTCTGTACCCCGGTCACCTGCCAAAAACCCTTCCCCAGTTAAATTCTCTCCAGTGGTGTCCCAGCCTAGTTCTCCCTCTCCTACCAACCCTCTGGACCGTCATGGAGACACCAGTCAGGAGGGCACAACAGTCAGacTTCTGTCTCTTCAGGAACACTCTAGTCCAATGCCCCAGAGACCAGTCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAAGCATGACTCTTCCCAGGGCCAGCTCAGCCACCAGAGGGTCAGAAGAGACCCAGGGGGCCAGAGGAGAACGGGGGGAACTGGTCAACATGGAACTTCTTGGGTTGCCTAACATTGGCAACACTTGCTTCCTTAACGCCACCCTGCAGTGCCTCCTGGTCCTGCCTTCCTTCTCAAAGGAAATCCTGCACCAGGAACAACTCTGgagctcctcccccttctccaacCTGCTCAGGTGTCTGTCTGATGTGCACCTTTCGGGTTTACCTGACAGTGTGGCAAACCAGGCCTCAAAAGCAGACCTCATGTGGAAGGTCAAGTACTCCTTGTCGGGATACGATTTGAAGTATCTGGGGGACACGCAACAGGACGCACACGAGTTACTTGTCAATATGCTGTGCCAGCTGAAGGAGGAGGGCATGATTCTGAAGACACTCGGGATGAACTATACCTGCCCTGTTTCCCAGCTGGAGTTCCAGCTTGTGTCGGTGCGCACATGTACCAGCTGTGGGCGCGAGTCGTCCACCAGAGAGGACTACAACCACCTCTCATTGGACATCAGCCCTGAGCGCACCTTGCTGAACAGCCTAGCACTCACTTTCAAAAGTGAACAGGTTGAATTCACATGTGAGGGCTGTAAAGGCCTCCACGCCTCAAAAGTGGAGCAGTTCCACACACTGCCTCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814381 lncRNA upstream 97972 4576367 ~ 4599810 (+) True LOC118941536
TU1814391 lncRNA upstream 105688 4591821 ~ 4592094 (+) True G1584760
TU1814344 lncRNA upstream 145655 4453998 ~ 4552127 (+) True G1584722
TU1814356 lncRNA upstream 210047 4486900 ~ 4487735 (+) False G1584731
TU1814355 lncRNA upstream 210166 4487164 ~ 4487616 (+) True G1584731
TU1814433 lncRNA downstream 4383 4704757 ~ 4796239 (+) True G1584797
TU1814464 lncRNA downstream 94016 4794390 ~ 4794793 (+) True G1584826
TU1814520 lncRNA downstream 220419 4920793 ~ 4921499 (+) True G1584869
TU1814567 lncRNA downstream 381645 5082019 ~ 5083416 (+) True LOC110498597
TU1814569 lncRNA downstream 388435 5088809 ~ 5090649 (+) True G1584906
XM_036953997.1 mRNA upstream 29335 4663996 ~ 4668447 (+) False LOC118941421
XM_036953998.1 mRNA upstream 29335 4663996 ~ 4668447 (+) False LOC118941421
XR_005037635.1 mRNA upstream 29335 4663996 ~ 4668447 (+) True LOC118941421
XR_005037633.1 mRNA upstream 52017 4644045 ~ 4645765 (+) False LOC118941420
XM_036953996.1 mRNA upstream 52017 4644341 ~ 4645765 (+) True LOC118941420
XR_005037637.1 mRNA downstream 63237 4763611 ~ 4770414 (+) False LOC118941423
XM_036954002.1 mRNA downstream 63237 4763611 ~ 4771296 (+) True LOC118941423
XM_036954003.1 mRNA downstream 82111 4782485 ~ 4794237 (+) False LOC118941424
XR_005037638.1 mRNA downstream 82111 4782485 ~ 4794237 (+) True LOC118941424
XM_036953809.1 mRNA downstream 110007 4810381 ~ 4813313 (+) True LOC118941353
TU1814367 other upstream 148593 4548555 ~ 4549189 (+) True LOC110514758
TU1813928 other upstream 634556 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 1006798 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 1054906 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 1074994 3617838 ~ 3622788 (+) False LOC110497294
TU1814555 other downstream 421617 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 421617 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 421617 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 729923 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 748102 5448476 ~ 5448938 (+) True G1585375

Expression Profile