RNA id: XM_036954010.1


Basic Information

Item Value
RNA id XM_036954010.1
length 9668
RNA type mRNA
GC content 0.47
exon number 20
gene id LOC110498597
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5069016 ~ 5084826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACATTGTGCTACGCTATGCACTTGTGAAGTCAACCCTGGCATgtactgtttttctctctctttcctctcacccctctcttatCTACTCACCCCCTATCTCCTTTCTTCTCTGTATTAGTTTTTAAAACCAACGCGCGCAGTTTTAGTGATACAACAACACCACGTTTAGTAGCCAAACGTCGCCCAAATAATGTTTTTATACGCCGAAGTATAAGTGAAAGTACAAATAGCTAAAGCTACACGAGCTCACTGAAATACGACGCGAGAAAGATTTTGGGGACAAGATATCCTTCATGTTGTGACATACCAGTGATGGGGCAGAATCACACCCGGTGACATGGCTTGTACAAGGCAATCCGCTTTAGAGTACATTCAAAATGGAAGGAGACTCCTTGTTGAAAGGCTCCAGAATCTGTCCCTCATTGTGGAAAACCTGTTCCAGCGCAAGGTTCTTCAGGAGGAGGAAGTCAGTAAAATTCAGGCAGAAGTTGACCGTTTTGACCAAACCAGAAAAATACTGGACTGGGTCACGGCCAAAGGAGAAGCTGCATGCTACGAGTTACTGATGATTCTAGACATCACAAGGAAGAGGACCTTAGACAACGCTGACTTACAGCAATGGATCAGCTGCTTCCCCTtcaaggaagacccagagatgtCAGACTACCTTGTTGGTTCAAAACCCTGTCACAGATATCAGTCACAGCTGAAATGTAAAGCTCGAAAGATCACAGAGGCTGCATGGAGACAAAGCTGTAGTCTCCTACCAGAGAGGTATAGAAATGAGGTGACTTTCTCTTACACTCCTCTTGTGTTAGATACAGACGTGccttcatctctctctaaaaTCGAAACAAAGAGCAAAAGATGCAAGAAAGCTCGCCCTAAAAAGCTAAAGAGCTTCATCCCCGTGGCCAAACAGGAAACGTCCCCGACTGACCTGCTTAAAACACCCAAGAGAAGGATCCTCTTAGTTGGAAAACCTGGAATTGGAAAGACAGCAGTCGCCCATCAAATGTTGAACCTCTGGGCACAGAAAGATCACAGAGAACTAGATTACATGTTTTACTTTGATGTGAGAGACATTTCACCCAGCACACATCCCATGAGACTGGAGGACCTTCTCTTTAACATGTACAGTGAGCCAGAAGAAAGTAGAGAAGAAGTGTTACAGGATATTAAGAAGAACTCTGAAAACGTTGTCATCATTTTTGATGGAATCACAGACCTCTCCTCTCATTCGGTGATAAAGAAACTTGTGGACAAGGACCTCCTCCTTGATGCAAAGATTGTGATCACATGCAGACCAGAGGTTCCATCAGGAGACTTCCTGAcagactggctctcgttcagagTGGAGGTGAAAGGGTTCAGTAATGAGTCCATCCGGGCTTACTTAACAAAGATGTTGAGTGCTGAGCCTAACCCTACGCCAAACCATGATTCCTTGAGCATTGTGTTAAACAACCTAGAGTTGTTCAGTCTGTGCCATGTCCCGATGTATGCATTGATGGTGGTTGCCTGCATGTATTATTCCACCCAAGAGGCTTCTAAGCAGCCATGGCCTACAACTAAGATGTACATCAACATCCTCCGTTACTGCATCCTAAAACACAGTGGCAAACAGATGAATGATCTCGACAAGTGTCTCGCAGAAAACAGAGAAAAAATATTGTCTTTAGCAGAAATGGCTTTCGATGCAACACAGCAAAAAACGATGAACTTGACAGAACTGAGCTACGAAGAGTTCTTTGGTGCCCTTTGGCTCTTACAGAATCCAGACAAAATCAGAGATGTTCTACAGAAGTGCCAGACTGAAGAATggaaacacacaaaacacatggTTCCTTTCATGTGTGGGCTTCTGAATGAGAGGAATATTCGATTGGTAAATGGTCTAGTTCCAGCTCAACAGATCAAGAAGACATCAGATTGGTTCTTCAAGGAAGTGGTAAACACATTTCTTCCACTTCAAACAAACCAAGATCATGCAGAAGGTGGTGCTCCTGAGTTTGAGAGAGATCTTCTGTTTTTATGTCAGTGCTTGTATGAATCTCAGTCTACTGAGGCCTGTTTGCTTCTTCTGGACAAACTGGACTACACTCTAGACCTGGATGAAGAACATCTTGATCCTCACCAGTGCTGTGCAGTCTCCTATATGATCAGTCAGTCTGCAGAGAGAAAGGTTGACTTGGACCTGAACAGCTGCACTGTGTCAGACCAAGGACTAAGGCTGATACTGGGCTCTCTGAAGAACGTCCGATATCTCAGATCTGACCCATCAATGCTGTGTCAACTCTGGACAACTTTGCTGCGCAGTGAGGCAGACATTGACTTCACTAGCTTACTTGGGCTCTGTGGAAATGAGTTGCACCTTCCATTCCAGGGTGAAAGACGAGTTTTTGTGAGAGCAGAAGAAGTGATGAAGCAGAGCCTAGAGAGGGTTAACCTCTGTCTACACTGGGATCGGAGAACTCTTCTCAGTGAGGCTCTCAGCAAGACCATTTTAAAGTGTTTAACACATATCAACAAACTCCATTTTACCCCACTACAAGATCAGAGAGAATCCCCTGAAAAActagagaaagaagagaaagcagtCCTACTAGATTTGTGTCTACAAGCAGGATTATGTCACAGAGAAACGTTCCAGGGTGCTGTGAACACACTGCTGTCACTGTTCTCTGTGTATCAAACTGAAAGATATGACATCTTGCTGGATCTGTACTCACATGTGAAGTACAATAGGAAACAAGCAGGCAGAAGTATCCTTCCATCATTGAGACCACTTTACCAGCCAGCTCCTGCagtctggtccatagacctctcAGAGAGAAAGGTCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAATCAGTAGAGCTGAAAGGCTGGTCAGATGAAGAGCGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACATCTGAGGTTTGCTCCACCACAGGATCAGATAGGATCCCCTgaagagtggagaaagagagagaagacattCCTACTGAATCTGTGTCTTCAAGCAGCCCTCCATGAGAGAGAAACCATACAAACAACTGTAGAGAAAGTGTTGTCACTGTCTGAAGTTTATCACGATCAGAAATGGGAGCTCCTGCTGCATCTGTACTCTCACGTGAAGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGACAGTTTACCAGTCAGCTCCTGCAGTCTGGTGCATAGACCTCTCAGAGAGAAAGGCTTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAATCAGTAGAGCTGTGGGACTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAACTGAGTTTCTATCCATGGTGGTCTGATCCCTCAAAGCTGATCAAGTTCCTGGTGGGTCTCCTGTCTCAAGCAGCAGAGTGGGAGGAGCAGTCAGGAGAGAAGACACTGAAGCTGGTATCATCAGTGTGTACTTACAGAACCTTCCCTTTCTGTGACGGGGATGATGAGGATGAGTGGTTTCAATGTGATCTCCTGCTGGATCTGTACTCACATGTGGAGGACTATGAGACTAAAACAGGCAGGAGTGTCCTTCCATCATTGAGACCACTTTATCAGTCAGCTCCTGCagtctggtccatagacctctcAGAGAGAAAGGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTACAGCTGAAAGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCTTACATCTCACAGCTGAGTTTCTGTCCATGGTGGTCTGATATCTCAAAGCTGATCAAGTTCCTGGTGGGTCTCCTGTCTCAAGCAGTAGAGTGGGAGGAGCAGTCAGGAGAGAAGACACTGAAGCTGGTATCATCAGTGTGTACTTACAGAACCTTCCCTTTCTGTGACGGGGATGATGAGGATGAGTGGTTTCAATGTGATCTCCTGCTGGATCTGTACTCACATGTGGAGGACTATGAGACTAAAACAGGCAGGAGTGTCCTTCCATCATTGAGACCACTTTATCAGTCAGCTCCTGCagtctggtccatagacctctcAGAGAGAAAGGCCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTACAGCTGAAAGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCTTACATCTCACAGCTGAGTTTTACTCCACCACAGTATCAGAGAAGATCCCCTgaagagtggagaaagagagagaagacattCCTACTGAATCTGTGTCTTCAAACAGCCCTCCATGAGAGAGAAACCATACAAACAACTGTAGAGAAAGTGTTGTCACTGTCTGAAGTTTATCAGGGTCGGAAATGGGATCTCCTGCTGGATCTGTACTCTCATGTGAAGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGACACTTTACCAGTCAGCTCCTGAAGTCTGGTCCATAGATCTCTCAGAGAGAAAGGTCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAATCAGTACAGCTGTGGGACTGGTCAGATGAAAAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGTTTCTGTCCATGGTGGTTTGATCCCTCAAAGCTGATAGGGTTCCTGGTGGGTCTCCTGTCTCAAGCAGCAGAGTGGGAGGAGCAGTCAGGAGAGAAGACACTGAAGCTGGTATCATCAGTGTGTACTTACAGAACCTTCCCTTTCTGTGATGAGGATGATTATGATGAGTCGTTTCAATGTGATTTCCTGCTGGATCTGTACTCACATGTGAAGGACTATGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGCCAGTTTACCAGTCAGCTCCTGCagtctggtccatagacctcAGAAAGAGAAACGTCTCCCTCCTCCTAGAAGTGCTGAAACTCCAACCAGAGAAGAAACCAGTACAGCTGAAAGGCTGTTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGTTTCTGTCCATGGTGGTCTGATCCCTCAAAGCTGATCAAGTTCCTGGTGGGTCTCCTGTCTCAAGCAGCAGAGTGGGAGGAGCAGTCAGGAGAGAAGACACTGAAGCTGGTATCATCAGTGTGTACTTACAGAACCTTCCCTTTCTGTGATGAGGATGATTATGATGAGTCGTTTCAACGTGATTTCCTGCTGGATCTGTATTCACATGTGGAGGACTACGAGACTCAAACAGGCAGGAGTGTCCTTCCAGCATTACAGCCAGTTTACCAGTCAGCTCCTGCagtctggtccatagacctcAGAAAGAGAAACGTCTCCCCCCTCCTAGAAGTGCTGAAACTCCAATCAGAGAAGAAACCAGTACAGCTGAAAGGCTGGTCAGATGAAGAGAGTGAAGTGAGGAGTTTCCTTCAGTGTCTGCCCTACATCTCACAGCTGAGCTGTGATTCTGACAGGTTCTTCCAGCGTGTGTGTGAATCCATCCCTGTGAGGTCCAGAGAGGATGCCCAGCTGTTGGCCTCTCTCCTCCAGGCCTTGGGCTCCACCCTGTCACTGGGAGGACAGTTACCCAGGAAAACCTGCAGGTCTGTGGTGAGAGTGCTTGGCCTCTGTGCCTCCAGAGTGGACCTCACTCTCACCCCCAGCAAGATGTCTCTGAAAGGAGCCTCACTTCTCTTCACACATGTATCACAGCTACACAAGCTCAGgCTGAATGTGGGCATGGCAGTGAGACTGGCCAGACTGGctaggaggacagggagagggggttCTCCACTGACTGTCACAGAGCTCTCCCTGGTCCTAAAGAGCAGCCAGCCACCAGAGAGAGTGTTATCCAGGGCTCTGAGTAGTGTGGCGTCCCTGCTGAGACTCTGGACGGTGCAGTGTCTGGACCTGACTGACTTCTGCATCCAGGGTCACTCTCTCATCACACTACTTTGTCACCAAGGCCCTCTCACTCTCAGACTGCACTCAGACACCCTGCAGCAGCTGGCTGTAGTTGTGTATGAAGCTCAGGACAAGGACTTGACTCGGTGGTTCCTGGAGAAGGTTGGTGGAGACCTGACCTCCTGTAGGCTGGACTGGGAGGtgcttctctctctgctgcagcatTCAACCCACAACATCACAGTGGACCTCAGGAAGAACAGGCTTCTAGAGAAGAACATCTCAGATCTTTTCCCCTTTCTGGGAAGGGTTATATTCAAGAGGCTCAGTTCCAGCTTTGTGAAGTCCACCATCAGACAGATCTATGACAGTAGAGCCAGTGACTGTGTGTCCAGTTTGTTGAGGTCTTCAGACCATTGGATCAACCTGAACAGCAGAGAGCTGGACAGAGTGGACTGTACTGCGCTGTGTTTCACCCTGCAGCACAGCCACCAAGTCAAAGTCAACCTGCTGTGGACCTCCATACCACCGGGGGAGATAGAGAGCATCCTGCCTCTtctggacagagtctcccaactCAGtgTTGACAGGATGCTGTTGCTGAGTTTCCTCCACTCCTGCGCTGCCTCTCAGATCCTGCAGGGGGCACTATCACCACCTTCAGCaataacaacagcagcagcagagctgCTCAGGGCTCTGCAGCACAGGTTGgacttctcctgctcctcctctgtgGACCTGTCGGCTCACGACCAGGGGGAGGCGCTGTgtctgaccactgaccactgtaGGGCCATAAACTCTGTTCTGAAGCAGAGCCAGCACAGCACACAGCTGGTTCAGAACCCGACCCAGAACCAGTCCCGAAACCAGCCCCAGGTGCAGCTCATCCTTAAAGACTGTGAGGTGGAGCACGGAGCACTGAGAGAGCTGCTTCCCATCCTGCATATTGTCAAGCTGAGCCCCAGCAAAGCTCTGCTACTTCAGCTGGTGGACCATGTGTGTGAGGGGATTGAAGAGGGAGTGCTGAGATACGCAGAGTCCCTGTGCAGAGCCCTGGATGGGGAGCTGGACCTCAGTGAGACCAGGCTGAACCAAAAGGCCTGTGGATCTCTGGCCCTGGTTCTGGAACACTCAGAGGGGCTGTCAGAACTGGACCTCAGCCACTGCCAACTCACAGACCGCCATCTACAGCCCCTGCTCACACACCTGCACAAAGTTGAAGTCCTTGACCTGAGTCACAATGACATCACTGATGCTCTGACCGACAGAATTCTCCAACTGGTCTCCACCAACACTTCAATCCGCACCGtacgGCTCTTCAGCAACACAATCAAGGACAGAAGTCCGTTCCTGACAGACAAGAGGTTTGACATCTGGTGAAGCAGCATCAGGTCCAAGTCCAGACAGAGGAAGCGAAGATGGATGTTGAAGAGGTAGAGGAAGCGAAGATGGATGTTGAAGAGGTAGAGGAAGCGAAGATGGATGTTGAAGATGGGTGTAGTAGCTACGAAGCCTCATCTCATCAACCTTAACCTGGACACTAAACGTATCCTAATTTTAACCAATTCTTAAATATTGAATGAAAGCCACACACCCTTAGTTTTTAGCTGACCTCATCATGGTGTCAGAAGAACTGCAAGTGATGTCATCAGGGATTTGGGGACTAAGGTATTGTAAAAATAGTTGAGACTCCAGAACTCTGGAATGTTCTGAGTGTAATGGATAGGAATGTGTAGTTTTATTTACCTCTTACATGGTTCTGAAAAACACAGGAACATGTGTAGTATAACGTTTTTACTAGATGATTTTTGTGATCTGACAATTTGTGAAATTCCTTCTGAAGGAATGGAATGTATTTGTGCTTTTATAGTCTAGTATTTATCAGGTTGATGTGAATGTGTTCTACAGTTGCAGTGGGAGACTTAATACATGAGTGTTTTGTTGCAGGTCAACCTCATGGTATTGTTACTCAGGCTAGCCCTGTTGAGAACCAAGCTTCCCTATTCAGGAAGCAAGAGATGTGTTGACTTCTCTTGAACGTTTGCTATGTTGTGCAACGTTTTGTACTGAATGACACGTTTCCCCGAAATGTTCCTGAACAGACTTCGAGGTACGTTTGGTGGGTGTAGCGAGGTGTGGCttgacatatttttatttttaaagggcCGTGGCCATGCTGACAGCATTCTCCAACCCACAACCCAACCCCTCCCCATTTTTCAACTGGTTGTTCAGTACAGCACTGTTTACGTTCATTTGAACCGTTTCAGAACGTAGAAACATACTGAACGCAGCCCTGGTGAAGTTCAGGGCAGAAAGTAGCTACAAGTGGGTGGAAACCATTGATGCCTCGCAACACGTCAAACCAATCAATTGCCTTGCTTTGGCGGAGCACTAAAGGTAGCCACTAGTGCCATAGGAGGAACAGTGTGTGAGGATGCCCAGGAAATCGCTGGTGTATAACATAGGCTGTATGTACACACAtcataataaaatgtatttagtaGAGCAGTTGTAATGCCTTCATCGACTTGTGATGAACATTACACGCAGCTTCCCTTTTAAGGGCATGTGGGGGAGGTTTCTTGAAATATAACATCCAATCAAAATGTAGCCGCTGGAACCCAGCAGACCATTCTGTTTTGGCTCATACAAAATTCTCCAattctccagcatgacaacaatgtgattttggaGGTATGGCTACATGAGACTAGTACAATGAGACTAGTTGGTCGAAGATTTTAGCTTATTCCTTTAGTCCCGCCCCATTTTACCTTCACAGATTTATGCTGGGATCTTTTCCACGTGTGAAGTAGCTGATGGCTCTTGCCCTTGAAGCATGGTGTTACAGATTCAAGCCTGGACTGGTCAATGTGGTTTTGGTAGCACTAacctgatggtgatagaagcatTGGATTCCTTCTCCGGTTATTCCTGTGGTTCGGGAACAAAAGTGTCTACTTTTTCCTCCATAACCACTGCTGGTTACTGTTCCATATCCGCAGAGGGGAATCCCAGGATGAACCACTCCCCACTTATCGCTTTCTTCCGGCCAACAAGGCACAGCCATCTTACGTGTCACAGCTACTCCCAGCAGCCTGTACCCCCAGCAGCCTGTACCCCCAGCAGCCTGTACCCCCAGCACTTGGCCTGCACCTTGTAAAAACCCATAGTGAATATCTGATGGAATGGCTTGGCCTGCACCTTGTAAAAACCCATAGTGAATGTCTGATGGAATGGCTTGGCCTGCACCTTGTAAAAACCCATAGTGAATGTCTGATGGAATGGCTTGGCCTGCACCTTGTAAAAACCCATAGTGAATGTTTGAAAAATATGCACACATTTTGCAATCCAAAATGTGTGCAATTCGAATCTCATCAAAGATTACTTTAACTAATTAGCAATTTTTCAACTACttaacatgttagctaacccttcccctaacccctaaccttaactctttaaactagctcctaatcctaaccttaactctagccTAGCCagcgttagccacaacaaattgtaatttgtaatatactgtatcatacgaaatggatgatggacttccacaaaacttgagacatctgtggcattgttgtgtaaTACAACTGCGCATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814520 lncRNA upstream 147517 4920793 ~ 4921499 (+) True G1584869
TU1814433 lncRNA upstream 272777 4704757 ~ 4796239 (+) True G1584797
TU1814464 lncRNA upstream 274223 4794390 ~ 4794793 (+) True G1584826
TU1814381 lncRNA upstream 469206 4576367 ~ 4599810 (+) True LOC118941536
TU1814569 lncRNA downstream 3983 5088809 ~ 5090649 (+) True G1584906
TU1814570 lncRNA downstream 14290 5099116 ~ 5102383 (+) True G1584907
TU1814562 lncRNA downstream 45204 5130030 ~ 5132249 (+) True G1584900
TU1814595 lncRNA downstream 66695 5151521 ~ 5151833 (+) True G1584932
TU1814597 lncRNA downstream 72356 5157182 ~ 5158472 (+) True G1584934
XM_036954015.1 mRNA upstream 2521 5040418 ~ 5066495 (+) True LOC110498596
XR_005037640.1 mRNA upstream 11000 5056767 ~ 5058016 (+) True LOC118941425
LOC118936569 mRNA upstream 32122 5035125 ~ 5036894 (+) True LOC118936569
XM_021573144.2 mRNA upstream 36328 5028709 ~ 5032688 (+) True LOC110497170
XM_036954008.1 mRNA upstream 41166 5024940 ~ 5027850 (+) True LOC110497180
XM_021573149.2 mRNA downstream 8762 5093588 ~ 5095659 (+) False LOC110497175
XM_036954016.1 mRNA downstream 8762 5093588 ~ 5095659 (+) True LOC110497175
NM_001160570.1 mRNA downstream 24715 5109541 ~ 5115195 (+) True LOC100301741
XM_036954021.1 mRNA downstream 248554 5333380 ~ 5390400 (+) True tet2
trnaa-ugc-141 mRNA downstream 309798 5394624 ~ 5394699 (+) True trnaa-ugc-141
TU1814367 other upstream 519827 4548555 ~ 4549189 (+) True LOC110514758
TU1813928 other upstream 1005790 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 1378032 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 1426140 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 1446228 3617838 ~ 3622788 (+) False LOC110497294
TU1814555 other downstream 37165 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 37165 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 37165 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 345471 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 363650 5448476 ~ 5448938 (+) True G1585375

Expression Profile