RNA id: TU1814567


Basic Information

Item Value
RNA id TU1814567
length 1113
lncRNA type sense_over
GC content 0.44
exon number 3
gene id LOC110498597
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5069016 ~ 5084826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGGATCTCTGGCCCTGGTTCTGGAACACTCAGAGGGGCTGTCAGAACTGGACCTCAGCCACTGCCAACTCACAGACCGCCATCTACAGCCCCTGCTCACACACCTGCACAAAGTTGAAGTCCTTGACCTGAGTCACAATGACATCACTGATGCTCTGACCGACAGAATTCTCCAACTGGTCTCCACCAACACTTCAATCCGCACCGtacgGCTCTTCAGCAACACAATCAAGGACAGAAGTCCGTTCCTGACAGACAAGAGGTTTGACATCTGGTGAAGCAGCATCAGGTCCAAGTCCAGACAGAGGAAGCGAAGATGGATGTTGAAGAGGTAGAGGAAGCGAAGATGGATGTTGAAGAGGTAGAGGAAGCGAAGATGGATGTTGAAGATGGGTGTAGTAGCTACGAAGCCTCATCTCATCAACCTTAACCTGGACACTAAACGTATCCTAATTTTAACCAATTCTTAAATATTGAATGAAAGCCACACACCCTTAGTTTTTAGCTGACCTCATCATGGTGTCAGAAGAACTGCAAGTGATGTCATCAGGGATTTGGGGACTAAGGTATTGTAAAAATAGTTGAGACTCCAGAACTCTGGAATGTTCTGAGTGTAATGGATAGGAATGTGTAGTTTTATTTACCTCTTACATGGTTCTGAAAAACACAGGAACATGTGTAGTATAACGTTTTTACTAGATGATTTTTGTGATCTGACAATTTGTGAAATTCCTTCTGAAGGAATGGAATGTATTTGTGCTTTTATAGTCTAGTATTTATCAGGTTGATGTGAATGTGTTCTACAGTTGCAGTGGGAGACTTAATACATGAGTGTTTTGTTGCAGGTCAACCTCATGGTATTGTTACTCAGGCTAGCCCTGTTGAGAACCAAGCTTCCCTATTCAGGAAGCAAGAGATGTGTTGACTTCTCTTGAACGTTTGCTATGTTGTGCAACGTTTTGTACTGAATGACACGTTTCCCCGAAATGTTCCTGAACAGACTTCGAGGTACGTTTGGTGGGTGTAGCGAGGTGTGGCttgacatatttttatttttaaagggcCGTGGCCATGCTGACAGCATTCTCCAACCCACAACCCAACCCCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1814520 lncRNA upstream 160520 4920793 ~ 4921499 (+) True G1584869
TU1814316 lncRNA upstream 281170 4520917 ~ 4800849 (+) True G1584698
TU1814433 lncRNA upstream 285780 4704757 ~ 4796239 (+) True G1584797
TU1814464 lncRNA upstream 287226 4794390 ~ 4794793 (+) True G1584826
TU1814381 lncRNA upstream 482209 4576367 ~ 4599810 (+) True LOC118941536
TU1814569 lncRNA downstream 5393 5088809 ~ 5090649 (+) True G1584906
TU1814570 lncRNA downstream 15700 5099116 ~ 5102383 (+) True G1584907
TU1814562 lncRNA downstream 46614 5130030 ~ 5132249 (+) True G1584900
TU1814595 lncRNA downstream 68105 5151521 ~ 5151833 (+) True G1584932
TU1814597 lncRNA downstream 73766 5157182 ~ 5158472 (+) True G1584934
XM_036954015.1 mRNA upstream 15524 5040418 ~ 5066495 (+) True LOC110498596
XR_005037640.1 mRNA upstream 24003 5056767 ~ 5058016 (+) True LOC118941425
LOC118936569 mRNA upstream 45125 5035125 ~ 5036894 (+) True LOC118936569
XM_021573144.2 mRNA upstream 49331 5028709 ~ 5032688 (+) True LOC110497170
XM_036954008.1 mRNA upstream 54169 5024940 ~ 5027850 (+) True LOC110497180
XM_021573149.2 mRNA downstream 10172 5093588 ~ 5095659 (+) False LOC110497175
XM_036954016.1 mRNA downstream 10172 5093588 ~ 5095659 (+) True LOC110497175
NM_001160570.1 mRNA downstream 26125 5109541 ~ 5115195 (+) True LOC100301741
XM_036954021.1 mRNA downstream 249964 5333380 ~ 5390400 (+) True tet2
trnaa-ugc-141 mRNA downstream 311208 5394624 ~ 5394699 (+) True trnaa-ugc-141
TU1814367 other upstream 532830 4548555 ~ 4549189 (+) True LOC110514758
TU1813928 other upstream 1018793 4062668 ~ 4063226 (+) True G1584344
TU1813473 other upstream 1391035 3688168 ~ 3690984 (+) True LOC118941415
TU1813447 other upstream 1439143 3640649 ~ 3642876 (+) True G1583951
TU1813430 other upstream 1459231 3617838 ~ 3622788 (+) False LOC110497294
TU1814555 other downstream 38575 5121991 ~ 5128284 (+) False G1584899
TU1814558 other downstream 38575 5121991 ~ 5128284 (+) False G1584899
TU1814559 other downstream 38575 5121991 ~ 5128284 (+) True G1584899
TU1815161 other downstream 346881 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other downstream 365060 5448476 ~ 5448938 (+) True G1585375

Expression Profile