RNA id: XM_036954039.1


Basic Information

Item Value
RNA id XM_036954039.1
length 3568
RNA type mRNA
GC content 0.52
exon number 12
gene id npnta
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5499157 ~ 5560224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTGGGTAGCAGCCCAGTGAACTTGtgcggagagacggagagagaaggaACCTGCGGGGTCCATTTAACACCAGTAGAGTGCACTCCGCTCCACACGCGCTGGGTCACTTCTCGAGGAAGAAACGGGCTGGTTTCTCCCCCTGCCTTTGCTGCACCTCCGAAACATTTTAAAGGATCGGGGTCCGTTTGAAGGACAACAGCGAATCTCCTCTCATGCTAGTGCGTGTTTAACGTTGGGAGGGAACAAATCTCCACTGTTTCGTTTCGTTTTAACGATTGAACACTGCAGTGTACAGTCCGACGTTTCACTTGGATTTTAGGAGTGCAAGCGCGGTGTGCGCTCATTCCCCTAACCATGGAATTATGGATAAAGTTGATGGTGTTGTACGGTTTCTGTTTAGGGGCAAGTGCTGAGAATGACGGCAGGTGGCCTCGGCAGATGGCCTCGTCCAATGGGCTGTGTCGCTACGGCGCCCGCATCGACTGCTGCTGGGGATGGACCCGGCGCTCCTGGGGCCACTGCCAACCTCTGTGCCAGCACGGGTGTAAGCATGGAGACTGCGTAGGACCCGGCAAATGCAAGTGTCACCCCGGCTTCACTGGAAAAACCTGCAATCAAGaccTGAACGAGTGTGGTCTGAAGCCCCGGCCGTGCAAACACAGGTGCATGAACACATACGGCAGCTACAAGTGCTACTGCCTCAATGGCTATATGCTGATGCCTGACGGGACATGTGGAAATACCCGTACCTGTGGTATGGCCAACTGCCAGTATGGCTGTGAGGTGCTGAAGGGAGAGGTGCGCTGTCAGTGCCCGTCGCCAGGGCTTCAGCTGGCGCCGGACGGAAGAACCTGTGTGGACGTGGACGAGTGTGCGAGCGGCATGGCCACGTGTCCCCGGTTCCGTAAGTGCGTCAACACATTCGGGAGTTACATCTGCAAGTGTCACGAGGGCTTCGACCTGCAATACATCAACGGGAAGTACCAGTGTGTAGATGTGGATGAGTGCTCCTCAGGCCAAAACCAATGCAGCAGTTTCGCCACCTGCTATAACACGCCTGGTTCCTACAAGTGCAAGTGCAAAGACGGCTACAGGGGGATGGGCCATGACTGCAAACCCATTCCCAAGGTGGTCATCGATCCCCCCAGGTTCCCCCCGAACCACCACAACATTATCCCTGACTCGGACCACAAGAGGACCACCACCACGATCCGACCGCCCATGACCGCCAAGAGAGTCGCCCCCACCGCCCCCAAAAGAACCACAACCACTCCCAAACCAACGACCacgaccactactactacaactactactagagCACCTTCTACAACCACACTAccacctcccccacctcctccaaGGACGATGCCCCCCGCCCCTCGTAAGCCAGTGGTCCCCACGAGACCACCAATCATACCCACCAGGAGACCCCCTGCAGTCACCCGTAAGCCCTATGTGCCCCCACGGCGTCCCGCCATCACCTCTCCACCGCCCCCCACCCGCAGGACCCCACCCTACGTGCCCACACGCCGCCCGCCTCCCCCAAAACAGCCCGAGCCGGTCACCCCAGTGGACAACACCATCGAAAAGGAGGTCACCAAACAGAGAGGTGACGTCCACATTCCACGTAACCATGATCACAACACCGTCTTGGGGGTCGACTTTGACATTGAGCTGGGCAACACGGCCGACGAAGCGAAGGATGACGCAGAGGCTGGCTACCTGAGCTGCTCCTTTGATAACGGCCTTTGCGGTTGGATCCGGGACAAGGATGGCGACCTGCACTGGGAGACAACACCGGACCCATCTGGTGGAAAATACCTCACCATCCCTGAGGTGAGCGACAAGAAGAGCGGGCGAGGGGCGCGCCTGGTCCTCCCGTTGACTCCTCCCTGGAACGACGGTAACCTGTGTCTGTCGTTCCGCCACAAGCTGGCAGGACACCATGTGGGTATGCTCCAGGTGTTTGTGAAGAAAGGGAAGCAGTACAGCCCGGCCGTGTGGGGAAGGACGGGGGGTAGCGGCTGGAGACATACCCAGATCACGCTGTGGGGCACGGGACTTGAGAGTGTGATTCTGAAGGGCGAGCGCGGGCGTGGCCGGAGCGGAGAGATGGCCGTGGATGACATCACCTTGAGAAAAGGTTCCTGCACCGAGGAGCACAATCTGAGAAGACATTAatacacacagcagagagagacagatatggagagagaaagagagaagtggagagaagatagagcccagggaggagcagaCTCTGATTGGACCCCCATAGAGGGTCCAAGAGCACCTCTGGGAAGAAGGGGCATTTCTCTCTGCCTGTCAACCAATAAGAAGACCGCACCAAACCTGTCCACCAACAAGAGGACTGCAACAAACCTGTCCACCAATAACTAGACTGCACCAAACCCTTCCACCAATAAGAAGACTACCCCAAACCACAGGGGAGAAAGAGGGTCCACCATGTGATCCCCCACCACCCCTACCCactctctccaactctccatcACCCGGTTCCTCACTATTGACCTGTGCTTGCCCCTGGTAACCCTGGAAACGTCCTTGTGAGCACTGCCACCCAGCCAATCACACTTCCCAAAGGCCTCCATCGATGTTTCATCATCTTGCTTTCATATTTTAGTCTGAAGCCATATCTGATTGTTTGCTATCCATCATTTAGATTGTATAACTGTTTTAACCTGCGTCGTGTTCATTAGGTACCAAACAGGGaaaaactgactgaaacagggagggactacgagggcttgtccaataagaaacaatTATTTACATTTTCCGTTGCAgagcatttgaaaacatttcctgTTCTGTGCCCTAATGAGCAGGACCCAGGGACAACAAGAGAAGACACCAACCTGTAATGATAATGGGGAGAATGAAAAATTCAAACCCTGCTCCGTTTATTTAGACAAATCAAGTTCTGTAAACTTAGCGCTGAGGCACTCGTATGTTACTATTGCTACAACCGTATGCAAGTTCACATGATAAGCCATTATTATCTGAATTCTGAATTTTAAGATTGACCGTGATTTCTCTCTATGTGCTTTGTTCTATTAAGTGCAAGCTGGTTGTACTGGCGATGACAGTATCaacgatttctggctctcacccAGTGTATTATTGTAAATGTAGTCGTGTGTACATATTCTAGAACACTTTCATGCTCATATTAAGCTGTGTGGTTTATACGTTTATGTAAATTCAGACTTATGTATTAATTGGAGTTGAAAAATGTATggtttttgtttgtttctatAATTCAAGATCAATATATGGATAAACATTTGAACCTTGTGGGAATACAAGGCTGTTTACAGTACATAAATGATCACATCTGTTCATGCTTTATGTTGAATTACTAGATCGCTTCCTCAGTAGTTTCTTAACGTTTCGCAGTACACAGTTGCATTATTGTGCCATCTGCCATAATGAAGGTTCTGATCTGTTGGAAATTCAAACTGTACTATATGCATGGATCCGTTCACCAAATTCTCATAATATACTCAGCCAATGATGTAAATAAAAGGACATTGACTGATACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1815115 lncRNA upstream 106158 5391634 ~ 5393007 (+) False G1585337
TU1815116 lncRNA upstream 106158 5391634 ~ 5393007 (+) True G1585337
TU1815112 lncRNA upstream 166083 5332779 ~ 5333082 (+) True G1585336
TU1815028 lncRNA upstream 270629 5228209 ~ 5228536 (+) True G1585271
TU1814622 lncRNA upstream 286847 5212088 ~ 5212318 (+) True G1584957
TU1815239 lncRNA downstream 2715 5562939 ~ 5563252 (+) True G1585436
TU1815240 lncRNA downstream 3757 5563981 ~ 5564311 (+) True G1585437
TU1815241 lncRNA downstream 4341 5564565 ~ 5565593 (+) True G1585438
TU1815245 lncRNA downstream 14869 5575093 ~ 5575794 (+) True G1585442
TU1815248 lncRNA downstream 17206 5577430 ~ 5577881 (+) True G1585445
XM_036954027.1 mRNA upstream 7980 5428930 ~ 5491185 (+) False LOC110497310
XM_036954053.1 mRNA downstream 223746 5783970 ~ 5807227 (+) False aimp1a
XM_021573370.2 mRNA downstream 224121 5784345 ~ 5807227 (+) True aimp1a
XM_036954079.1 mRNA downstream 383401 5943625 ~ 5966079 (+) False LOC118941430
XM_036954078.1 mRNA downstream 383406 5943630 ~ 5966075 (+) True LOC118941430
XM_036954061.1 mRNA downstream 405974 5966198 ~ 5970708 (+) False LOC110497324
TU1815155 other upstream 8018 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 28942 5430297 ~ 5470223 (+) False LOC110497310
TU1815171 other upstream 50227 5448476 ~ 5448938 (+) True G1585375
TU1814558 other upstream 370881 5121991 ~ 5128284 (+) False G1584899
TU1815286 other downstream 83532 5643756 ~ 5715375 (+) True G1585483
TU1815626 other downstream 248754 5808978 ~ 5812853 (+) True G1585804
TU1815818 other downstream 609860 6170084 ~ 6170827 (+) True G1585983
TU1816080 other downstream 801624 6361848 ~ 6362312 (+) True G1586200
TU1816647 other downstream 1494621 7054845 ~ 7056469 (+) True G1586672

Expression Profile