RNA id: XM_036954078.1


Basic Information

Item Value
RNA id XM_036954078.1
length 2026
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC118941430
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5943625 ~ 5966079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCAGCTGACTGTAGGCTAGGCTGTACAGTAATACAGAGAGGGGTTGGACCACTGTATGTTTGCATGTGGGAGGAGCGCACGCTCAAAGACAGAGTTCATTTCAGCCATGTAAACATTAGGAGTTTGATCGCTGAAAGAACAAGGCGCACAACTGGAGAGGATCCCAAGCAAGGCAGGGGGAAGACATCTTTGCCTCAGTCAATCCAAATACAGTAGGCCCAACAACAAGGACTAATTCCTATTTATCCAGGGCCCTCAGAGGCACTAGCTGACTTTGGGTGAACCAGAGAGCTCTTCATTGGTGTGTGGACAGTAGACAGTGTTGGACCATGGCGCTCGTGGACCCGACTGCATCCCATCTGGACCCGGGCATGGATGGTGAGAGCGGGGTCCTCGCCAGTGTCTTTGGGGTCCTCCCTAACGCCAACTGCCCCAAACACGGGCAAAACACTCCGGAGGATACGAAACGATGCCTACGCAAGGTCATCGGGCACCACAGGGACTACGTCAAGATCTCGCTGCCAGACGCCAAGGGCAACCGGCTGCCCACGGAGTGGTGGAAGACAGCCATCGCGTTCTTCTACGCCATCTTCAACCTGGTCCTGACCACCGTGGTCATCACGGTCGTCCACGAGAGGGTCCCGGAGAAGGAGAACAGCCCGCCACTGCCCGATAAGTTCTTTGACTACATCGACCGGGTGAAGTGGGCGTTCACGGTCACCGAGATCAACGGCATGCTCCTGGTGGGAATCTGGGTTATACAGTGGCTTTTCCTCAGATACAAGTCGATTGCAGGTCGGAGGTTCTTCTTCCTGATTGGCACCCTCTACCTGTACCGCTGCGTCACCATGTACATCACAACCCTTCCTGTACCCGGCAATCACTTCACCTGTGCCCCCaagctgtatgGGGACTCTCACGCTAAGATGCAGCGTGTGCTGACGTTGATCTCCGGCGGTGGTCTGTCCATCACCGGCTCCCACCTCATGTGTGGTGACTTCCTCTACAGCGGACACACCGTCATGCTTACCCTCACCTACCTGTTTATTAAAGAGTACTCCCCGCGGACGTTCTGGTGGTACCACCTGATGTGCTGGCTGCTGGCTGCTGTGGGAGTGGTGTGTATTCTGGTGGCCCACGAACACTACAGTGTGGATGTGGTGGTGGCCTACTTCATCACCTCACGCCTCTTCTGGTGGTACCACACCATGGCCAACGTCCAGGCCCTGCGGTGCTCGCCCAACAACTACCTCACCAACACCTGGTGGAACCCCGTGTTCAACTTCTTTGAGAGGAACGTGCAGACCCAGGTGCCCTGCTCCTTCTGCTGGCCAATCACCTGGCCCCCTGCCTGCCTTAAGAACTCCTGTAAGAAGTACAGTGCAGTGCAGAGCCTGCGGGAGGAGTAGGGAGAAGGGACTCCACCCCAGTTCAGGGTCCTTTGAACACCCCAACCTATTTTCTATTCATGCAGTATTTATACTCTATTATGTGATTTAAAGTATTATTGTGAAGGATAGTTGAAGTTTGTGAGGAAATGGTCATATAGGGAAAGTATGTGAGAAGAATAACATAGTCCACATTGGGTCCTTGTGTACTTCACCACTacaatgtatgttatttatgAGGTCAGTTTATTTGAAAATGTTCTTTATTCTTGTGAATGTTACTGTAACAAACTCAACTGAAGTCAACATGTTGCGATGTCATGCAGCGCTTTGCCACTGGCTTGCAGCTTTACTCAAAACTCCAACATAAAAATTGAATTTTATAGAGCTATACATTATTACGTTTACATCAATTAGATTGAATGAATATcaagtactttaaaaatatactTTCCAAAATGTGCCTTTTAAATACAAATGCATGCAATTTTAAATTGCAAACTTTAAGATGTTTGTTTTCAATGTTTAATATTGTGTATTAATTTAATTAGCATTTAGTCTTTAGTCTCATATGATTGTGTGTCCTAATGTACCATCATTTATACCTTCAGAATAAAAAAACAACACGTTGACTTC

Function

GO: NA

KEGG:

id description
K04714 SGMS; shingomyelin synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1815719 lncRNA upstream 2559 5934003 ~ 5941071 (+) True G1585891
TU1815717 lncRNA upstream 9357 5929874 ~ 5934273 (+) False G1585891
TU1815707 lncRNA upstream 34291 5907683 ~ 5909339 (+) False G1585882
TU1815708 lncRNA upstream 34291 5907683 ~ 5909339 (+) True G1585882
TU1815672 lncRNA upstream 75529 5867887 ~ 5868101 (+) True G1585848
TU1815754 lncRNA downstream 24900 5990975 ~ 5992041 (+) True G1585922
TU1815755 lncRNA downstream 28338 5994413 ~ 5995647 (+) True G1585923
TU1815771 lncRNA downstream 76959 6043034 ~ 6043288 (+) True G1585939
TU1815772 lncRNA downstream 79639 6045714 ~ 6045993 (+) True G1585940
TU1815779 lncRNA downstream 116825 6082900 ~ 6083157 (+) True G1585947
XM_036954053.1 mRNA upstream 136403 5783970 ~ 5807227 (+) False aimp1a
XM_021573370.2 mRNA upstream 136403 5784345 ~ 5807227 (+) True aimp1a
XM_036954042.1 mRNA upstream 383406 5499164 ~ 5560224 (+) False npnta
XM_036954061.1 mRNA downstream 123 5966198 ~ 5970708 (+) False LOC110497324
XM_036954060.1 mRNA downstream 124 5966199 ~ 5971268 (+) False LOC110497324
XM_036954059.1 mRNA downstream 126 5966201 ~ 5971239 (+) False LOC110497324
XM_036954057.1 mRNA downstream 129 5966204 ~ 5973479 (+) False LOC110497324
XM_036954058.1 mRNA downstream 129 5966204 ~ 5973479 (+) True LOC110497324
TU1815626 other upstream 130777 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 228255 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 452483 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 473407 5430297 ~ 5470223 (+) False LOC110497310
TU1815818 other downstream 204009 6170084 ~ 6170827 (+) True G1585983
TU1816080 other downstream 395773 6361848 ~ 6362312 (+) True G1586200
TU1816647 other downstream 1088770 7054845 ~ 7056469 (+) True G1586672
TU1817945 other downstream 2773469 8739544 ~ 8844780 (+) True G1587727
TU1818036 other downstream 2934911 8900986 ~ 8947363 (+) True G1587790

Expression Profile