RNA id: XM_036954060.1


Basic Information

Item Value
RNA id XM_036954060.1
length 1875
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110497324
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 5966198 ~ 5973479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAATCCCCATGCGTCGTTTGCGTACACAGACAAATAACATGGCAGACCGTTCTGAAAAGCATATTTAAATTTTCAAAATATACTTCGAATAGTCTAAATATTCAACTCGTTTCCAAGGATTACGAGGTATTTTTTTTTGTGCTTTGCAGCCGATATAAACCCCTGGTTATGGAATTATGGCACGAGCTCCTGGGCACTTCTGCGCCGTCCAATGTCTGCATTCTGGCCTTGACAGTATTCGTGGCCGTCTATTATCTAATGCACACATTTCGCAAACACCAGGATTTCTCCAATATTCCTCCTGGTCCTAAACCATGGCCAATAGTTGGAAATTTCGGCGGGTTTCTGGTTCCCAATTTCATCTGGAGGAGGTTTGGAGGCTGGGGAGGGAAGGACGTCCCAAAGTCCAAGACACGAGCTCTAATTTCGCCTCAAGTTATTATCACGGAACAAGCTAAGGTTTACGGTAACATCTACAGTATGTGGGTAGGGAGTCAGCTGGTAGTAGTACTGAACGGATATGAAGTGGTCAGGGATGCCCTCTCAAACCGGGCAGATGTGTTCTCCGACAGACCAGAGATTCCCACCGTTACCATCATGACAAAGCGGAAAGGCATAGTTTTTGCACCTTATGGACCAGTATGGAGAAGGCAGCGCAAGTTCTGCCACACCACGCTGCGGAACTTTGGCCTGGGCAAGTTGAGCCTGGAGCCCTGTATCCTTGAGGGGCTGGCTGTGGTCAAATCTGAGCTGCTGCGTCTCAGCGAGGAAGATACTGAGGGTTCAGGAGTGGACCTGACCCCTCTGATAACTAACTCTGTGTCCAACGTAATCTCCTACATCGCTCTGGGCCAGCGCTTCCACCACACTGACCGGGAGTTTGGCGCCCTGCTGGACCTGATGGCCCGCGGCCTAGAGATCATCGccaacagcGCGGCGGTCCTCATCAATGTCTTCCCCCTGCTCTACTACCTGCCCTTCGGTGTCTTCAGAGAGGTACGGCAAGTGGAAAGGGACATCACTGCTTTCCTGAAACAGATCATCACCAGACACAGGGAGACGTTAGATCCAGCCAACCCCAGAGATCTTATAGACATGTACCTGGTAGAGATGCTGGCCCAGGAGGCCGCTGGGGAGACGGACAGTAGCTTTTCAGAGGACTATCTATTCTACATCATAGGAGACCTCTTCATCGCTGGTACtgataccaccaccaacacagtgcTGTGGATGATGCTCTACATGGTCGTGTATCCAGATATCCAAGGTACTACATCAGAAAGAGGGGTGTGGAGGACCAGTTCAATGGAACCTAAAGAGAACTCCTTGTTGAAGCATGATGAAAGAGGGTGCAGGCGGAGATCGATGCAGTGGTGGGCCCAGACAGGGTCCCGTCTCTCACTGATAAAGGCAGCCTGCCGTTCACAGAGGCCACCATCATGGAGGTGCAGAGGATGACTGTGGTGGTCCCCCTGGCCATCCCTCACATGGCCTCAGAGACCacagAGTTCCGTGGCTATACGATCCCTAAGGGCACAGTGATCATCCCCAACCTGTGGTCTGTCCATAGGGATCCCACTGTGTGGGAGGAGCCAGACGACTTCAACCCCTCTCGTTTCCTAGACGACCAGGGGAATCTCCTGAGGAAAGAGTGCTTCATACCGTTCGGAATAGgCCGCAGGGTGTGTATGGGCGAGCAGCTGGCTAAGATGGAGCTGTTTCTGATGTTCACCAGCCTGCTGCAGGCCTTCAGTTTTAGACTGCCCGAGGGGCTGGCCCCTCCTCCCATGCACGGGCGCTTTGGCCTCACCCTGGCCCCCTGCTCATACACTGTGATTGTGAGGCCCCGGCGATGAGGCCACCAGACGAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1815719 lncRNA upstream 25128 5934003 ~ 5941071 (+) True G1585891
TU1815717 lncRNA upstream 31926 5929874 ~ 5934273 (+) False G1585891
TU1815707 lncRNA upstream 56860 5907683 ~ 5909339 (+) False G1585882
TU1815708 lncRNA upstream 56860 5907683 ~ 5909339 (+) True G1585882
TU1815672 lncRNA upstream 98098 5867887 ~ 5868101 (+) True G1585848
TU1815754 lncRNA downstream 19707 5990975 ~ 5992041 (+) True G1585922
TU1815755 lncRNA downstream 23145 5994413 ~ 5995647 (+) True G1585923
TU1815771 lncRNA downstream 71766 6043034 ~ 6043288 (+) True G1585939
TU1815772 lncRNA downstream 74446 6045714 ~ 6045993 (+) True G1585940
TU1815779 lncRNA downstream 111632 6082900 ~ 6083157 (+) True G1585947
XM_036954079.1 mRNA upstream 120 5943625 ~ 5966079 (+) False LOC118941430
XM_036954078.1 mRNA upstream 124 5943630 ~ 5966075 (+) True LOC118941430
XM_036954053.1 mRNA upstream 158972 5783970 ~ 5807227 (+) False aimp1a
XM_021573370.2 mRNA upstream 158972 5784345 ~ 5807227 (+) True aimp1a
XM_036954039.1 mRNA upstream 405975 5499165 ~ 5560224 (+) False npnta
XM_021573383.2 mRNA downstream 1078 5972346 ~ 5975764 (+) True LOC110497328
XM_036954081.1 mRNA downstream 151685 6122953 ~ 6151945 (+) False LOC110497334
XM_036954082.1 mRNA downstream 151686 6122954 ~ 6151945 (+) True LOC110497334
XM_036954094.1 mRNA downstream 235025 6206293 ~ 6222302 (+) False LOC110497332
XR_005037642.1 mRNA downstream 314913 6286181 ~ 6288416 (+) True LOC118941431
TU1815626 other upstream 153346 5808978 ~ 5812853 (+) True G1585804
TU1815286 other upstream 250824 5643756 ~ 5715375 (+) True G1585483
TU1815155 other upstream 475052 5489088 ~ 5491147 (+) True LOC110497310
TU1815161 other upstream 495976 5430297 ~ 5470223 (+) False LOC110497310
TU1815818 other downstream 198816 6170084 ~ 6170827 (+) True G1585983
TU1816080 other downstream 390580 6361848 ~ 6362312 (+) True G1586200
TU1816647 other downstream 1083577 7054845 ~ 7056469 (+) True G1586672
TU1817945 other downstream 2768276 8739544 ~ 8844780 (+) True G1587727
TU1818036 other downstream 2929718 8900986 ~ 8947363 (+) True G1587790

Expression Profile