RNA id: TCONS_00005740



Basic Information


Item Value
RNA id TCONS_00005740
length 542
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id XLOC_002489
representative True

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 356555 ~ 358707 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


atggcatTGCGGCAGTTGTATAATAGGGTGTATATAATAGGTTATGTGTGCTGTGCTGTTGTGCTGTACAGAGAGACGGGTGCGCTGGACCGCAGCAGCGACATCATGATGGAGATCGACCAGCTGCAGGACACAGACTCTCTCCACCTGCAGGACAAACTGGATCAGGTGTGGCAGCTCAGAGAAACCATCACTGCTGAAGTGTTGAGCGCTCCAGAATCTCCAGCTGAGAAAAACAACCCAGAGCGAGTGGACAGAAGCACAGAGACGGAGCAGAGCGACACACACGTGCAGGAGCTACAGAGGCATCTTCATAAGGCTGAGAGGAGGAACCGAGAGTTGGAGCAGGAGATGGCAGGCCTGAGGGAGCAGATCCTCCGACTGAGCGCTGTCAGAAACACAGGTCAGATCATCATCTCTCACACTGATCATCAGATCTCCTCATAACTCGCACATCCCACAGCTCAGAATATCTGTACAGAAGCTCAGCGATGAGAATAGAGATAAATATCCCATCCAGGAATAGATGACGAGACACATGC

Function


GO:

id name namespace
GO:0033036 macromolecule localization biological_process
GO:0051345 positive regulation of hydrolase activity biological_process
GO:0030695 GTPase regulator activity molecular_function
GO:0005096 GTPase activator activity molecular_function
GO:0051020 GTPase binding molecular_function
GO:0060589 nucleoside-triphosphatase regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00005739 lncRNA downstream 1898 354093 ~ 354657 (-) True XLOC_002488
TCONS_00005738 lncRNA downstream 46702 307849 ~ 309853 (-) True XLOC_002484
TCONS_00004649 lncRNA downstream 147969 207082 ~ 208586 (-) True XLOC_002481
TCONS_00005958 lncRNA downstream 175851 179863 ~ 180704 (-) True XLOC_002480
TCONS_00005957 lncRNA downstream 180993 167409 ~ 175562 (-) True XLOC_002479
TCONS_00005959 lncRNA upstream 57290 415997 ~ 420862 (-) False XLOC_002491
TCONS_00005960 lncRNA upstream 57290 415997 ~ 420918 (-) False XLOC_002491
TCONS_00005961 lncRNA upstream 57290 415997 ~ 421109 (-) False XLOC_002491
TCONS_00005962 lncRNA upstream 57290 415997 ~ 421144 (-) False XLOC_002491
TCONS_00005963 lncRNA upstream 57290 415997 ~ 421413 (-) False XLOC_002491
TCONS_00004657 mRNA downstream 13991 323401 ~ 342564 (-) True XLOC_002486
TCONS_00004655 mRNA downstream 33786 311722 ~ 322769 (-) False XLOC_002485
TCONS_00004656 mRNA downstream 36402 311917 ~ 320153 (-) True XLOC_002485
TCONS_00004654 mRNA downstream 46661 304596 ~ 309894 (-) False XLOC_002484
TCONS_00004653 mRNA downstream 56555 284354 ~ 300000 (-) True XLOC_002483
TCONS_00004659 mRNA upstream 1530 360237 ~ 373575 (-) True XLOC_002490
TCONS_00004660 mRNA upstream 241457 600164 ~ 641609 (-) False XLOC_002493
TCONS_00004661 mRNA upstream 241718 600425 ~ 625441 (-) True XLOC_002493
TCONS_00004662 mRNA upstream 285867 644574 ~ 690170 (-) True XLOC_002494
TCONS_00004663 mRNA upstream 724254 1082961 ~ 1133162 (-) False XLOC_002496
TCONS_00004658 other downstream 16528 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 280364 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 282165 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004703 other upstream 2508013 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2509771 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3147833 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3409944 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 4659851 5018558 ~ 5020500 (-) False XLOC_002543

Expression Profile


Expression of TCONS_00005740 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 12.
End of interactive chart.
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Expression of TCONS_00005740 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
End of interactive chart.