RNA id: TU1818382



Basic Information


Item Value
RNA id TU1818382
length 790
RNA type TUCP
GC content 0.39
exon number 2
gene id LOC118941443
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 8965525 ~ 8971363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGAAATAAACATAGAATGGACAATTGTATTTTGTGTAGAAAATCACCTTTGTCTGATCTTTTGATAGTACCTGAACCTGCATCATTTGAAGAATGtgttaaatgtaaaatgttcaatATTCAGAGAAAATACTACATTCCCTTGTGTGACATAGAATGTAGGATTGCTCGAGGGAGCACTAGAGGCAGAACCATGTTAAACGAGACTGGATTAGGAGACAAGGATTGTGCTGCCTATGACATTAAAACTGAATTAAATGGACCTCAATTAGACAGAAGTATTGCGGATAGTTTCTGGATGTGTGGGAATGACAAACTGTTGAATGTACTGTACTGCCAGATGGATGGACGGGTCTTTGTACCTTAGTTAGAGCAATTCAACAGGTAGTCATCATGGGGTGATTTAATAATGGTTATGTTAACTCTAGAGTTAAGAGGGCGTATGAGAAAGACACTGAGGTATACTTTGATGCAATTGGACAGCCTAGAGGGGTACCTCGGGAGTTCAAGGCAAGAGATGAAGTTAGATCTGGATTTGAATCTATATTTTTGTGGATAACACCAAATAAGAATTTAGAGTGGATTAATTACATATACTATAACCAACAGAGATTCATTAACTATATTGACTCGGCTTTAACGGCGTTGGGGGAACAGGTACAGGATACCAGTAAAATGTCTTGCCAAAATAGACAGGCTCTCAATTGGCTTTTTGCAGAGAAGGGTGGAGTTTGTTATGTTCGGGGATGATTGTTGCACCTTTATTCCCAATAACACTGCGCCTAATGGA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1818354 lncRNA downstream 27644 8916151 ~ 8939652 (-) True G1588029
TU1818320 lncRNA downstream 36008 8854241 ~ 8931288 (-) True G1588004
TU1818347 lncRNA downstream 70733 8895858 ~ 8896563 (-) True G1588022
TU1818302 lncRNA downstream 132296 8833965 ~ 8835000 (-) True G1587991
TU1818299 lncRNA downstream 133622 8832414 ~ 8833674 (-) True G1587990
TU1818422 lncRNA upstream 3166 8971470 ~ 8973876 (-) True G1588056
TU1818442 lncRNA upstream 48753 9017057 ~ 9018392 (-) True G1588071
TU1818407 lncRNA upstream 65850 9034154 ~ 9035467 (-) True G1588041
TU1818410 lncRNA upstream 69236 9037540 ~ 9038194 (-) True G1588044
TU1818450 lncRNA upstream 102576 9070880 ~ 9074917 (-) False LOC118941445
XR_005037652.1 mRNA downstream 6827 8958065 ~ 8960469 (-) True LOC118941444
XM_036954157.1 mRNA downstream 92924 8848001 ~ 8874372 (-) False LOC118941442
XM_036954158.1 mRNA downstream 92924 8848001 ~ 8874372 (-) True LOC118941442
XM_036955477.1 mRNA downstream 157677 8805462 ~ 8809619 (-) True LOC110497222
XM_036954146.1 mRNA downstream 311814 8645589 ~ 8655482 (-) True LOC118936568
XM_036954159.1 mRNA upstream 26904 8995208 ~ 9004935 (-) True LOC110497226
XM_036954165.1 mRNA upstream 69988 9038292 ~ 9042976 (-) False LOC110497236
XM_021573242.2 mRNA upstream 69989 9038293 ~ 9042840 (-) False LOC110497236
XM_021573243.2 mRNA upstream 69989 9038293 ~ 9042943 (-) True LOC110497236
XM_021573233.2 mRNA upstream 80235 9048539 ~ 9052165 (-) True LOC110497232
TU1818317 other downstream 13620 8902855 ~ 8953676 (-) False G1588003
TU1818318 other downstream 13620 8948744 ~ 8953676 (-) True G1588003
TU1817755 other downstream 632418 8243558 ~ 8334878 (-) True G1587567
TU1817696 other downstream 742263 8146257 ~ 8225033 (-) True G1587522
TU1817337 other downstream 1074017 7888978 ~ 7893279 (-) False LOC110500908
TU1819455 other upstream 1168556 10136860 ~ 10145569 (-) True LOC110498432
TU1820712 other upstream 2156084 11124388 ~ 11178117 (-) True LOC110497368
TU1820805 other upstream 2302212 11270516 ~ 11270818 (-) True G1590098
TU1821361 other upstream 2673103 11641407 ~ 11641866 (-) True G1590583
TU1822015 other upstream 3109414 12077718 ~ 12126489 (-) False LOC110497375

Expression Profile


TU1818382 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU1818382 Expression in each Bioproject

Bar chart with 12 bars.
TU1818382 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.