RNA id: TU1819455



Basic Information


Item Value
RNA id TU1819455
length 1331
RNA type TUCP
GC content 0.51
exon number 2
gene id LOC110498432
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 10134147 ~ 10145900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TACCATTCTGTGTCCTCCTCTCGTTCATACCATTTTCCCCCCattcttttttctttttctcttttaCAGTCATTGAGCATCCCGAAAACAATGCAGTGTGGACATCCCCTGGGACAGCACGATCtcgcagaaagagagaggtgacacCGCGATTTGTTAGCTCCAATGACAATGTAGCCTATTGCTCGGTGAAGAGTAAAGCAAGTTTGATATGATAACTGTTTGTATAGGAGGAGGACCCAACCAAACAAGCATGAGTCATAGCGCACAGCCACATCTTCGCTAGACCCTCGCAAGAAAATCGATATTACATGCTTGACCCAATTATCATTTAGGCTACCTCCTCTGATCAGACCTGTATCCCGAACCGCTCCGATCGAAGGCGCGGCTTTATGTCACGGAGACCTGCTTGAAATTATTTCATTGATATTCAGCCGGGTGCTTCAGCCGCACCGTGGAAACAAACAGGGGCTAAATAGCGCAGTAATCAACCCCCGAATATGATATGATACGGGGACTACACCGCACCAGGGAATTACACAAATAGACAGGGACAGGATTGTGGACACCTGGTTTGACTTTGGATCCCTACAGTAGAAGTGTCtcagaggactgtctcaatacagGATGGGAACCAACCCAAAAAGGACAGTGACAGTCCAAATGGTCCCTCAACTGGCTGGAGTGGAAGCTCTGGGAAACCAGGAGTCTAACGCCAACTGGGCTAAAGAACCTAACCTGAACCTCACTCAGGGTTGCCCTgcccccaccactaccactacccctGTCCCTACAGAACACACACGGGATAACCTGTGTCTGACAACCCCCAACACAACCTCCAGGATCCAATCAACTGGCCATGGACAACCGGTTGGCGGCAGAGTGGGGTCCAACACCAACACAACTTTCTCGACCAATGGCGACAGAGGGAAATCGCCATCGGAGCATGTGATTGGAATAGAGCAGCAGATGGTATTGACATGCCGAGGAGGTGTGAGTGTAACCGAGGCGACGGCAGAGGGCCGTAGGGACGGCAACGCCAATTTGACAGCGTTAACCCCCACAGCCGCCGCCGAGGAGAAGGAGAAGCATATCTGTAAGGCCAGCCTGTCGTCCGCCATTACATCATCAAAGGTTGACGTGCATACAAATTactgcagagagaaagagcctGGTGGAGCAGGGGCGGGGGAGGGGTGTGCAGCCAAGCCATCGCCAGAGCCCACAGAAGTACAGAGTGCTACAGCCAGAGTTTCTGCAGTAGCTAAAGAGGAGTCACTACTAGAAGGGGACAACAAAAACGCAACCACACCAAATCAACATCCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1819471 lncRNA downstream 3868 10132759 ~ 10132992 (-) True G1588928
TU1819457 lncRNA downstream 4241 10130666 ~ 10132619 (-) True G1588914
TU1819465 lncRNA downstream 16477 10119062 ~ 10120383 (-) True G1588922
TU1819321 lncRNA downstream 60002 10066408 ~ 10076858 (-) True LOC110498641
TU1819419 lncRNA downstream 108933 10027681 ~ 10027927 (-) True G1588878
TU1819478 lncRNA upstream 3877 10149446 ~ 10149922 (-) True G1588935
TU1819481 lncRNA upstream 17983 10163552 ~ 10163873 (-) True G1588938
TU1819482 lncRNA upstream 19106 10164675 ~ 10165290 (-) True G1588939
TU1819483 lncRNA upstream 20276 10165845 ~ 10166353 (-) True G1588940
TU1819492 lncRNA upstream 46212 10191781 ~ 10192273 (-) True G1588949
XM_036954211.1 mRNA downstream 12596 10077141 ~ 10124264 (-) True LOC110498434
XM_036954212.1 mRNA downstream 17916 10077141 ~ 10118944 (-) False LOC110498434
XM_036954213.1 mRNA downstream 23752 10077141 ~ 10113108 (-) False LOC110498434
XM_036954214.1 mRNA downstream 59949 9998635 ~ 10076911 (-) False LOC110498641
XM_036954215.1 mRNA downstream 59949 9998635 ~ 10076911 (-) False LOC110498641
XM_021575061.2 mRNA upstream 12626 10158195 ~ 10163470 (-) True LOC110498444
XM_036954238.1 mRNA upstream 21900 10167469 ~ 10199909 (-) False LOC110498426
XM_036954237.1 mRNA upstream 21900 10167469 ~ 10199999 (-) True LOC110498426
XM_036954275.1 mRNA upstream 161851 10307420 ~ 10308850 (-) True LOC110498448
XM_036954244.1 mRNA upstream 163389 10308958 ~ 10648951 (-) False LOC110498640
TU1818382 other downstream 1168556 8967296 ~ 8968304 (-) True LOC118941443
TU1818317 other downstream 1183184 8902855 ~ 8953676 (-) False G1588003
TU1818318 other downstream 1183184 8948744 ~ 8953676 (-) True G1588003
TU1817755 other downstream 1801982 8243558 ~ 8334878 (-) True G1587567
TU1817696 other downstream 1911827 8146257 ~ 8225033 (-) True G1587522
TU1820712 other upstream 978819 11124388 ~ 11178117 (-) True LOC110497368
TU1820805 other upstream 1124947 11270516 ~ 11270818 (-) True G1590098
TU1821361 other upstream 1495838 11641407 ~ 11641866 (-) True G1590583
TU1822015 other upstream 1932149 12077718 ~ 12126489 (-) False LOC110497375
TU1822002 other upstream 2050526 12196095 ~ 12204414 (-) True LOC110497375

Expression Profile


TU1819455 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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TU1819455 Expression in each Bioproject

Bar chart with 16 bars.
TU1819455 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.