Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU1820364 |
| length | 3226 |
| lncRNA type | sense_over |
| GC content | 0.44 |
| exon number | 2 |
| gene id | LOC110498648 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 10915252 ~ 10964718 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0045879 | negative regulation of smoothened signaling pathway | biological_process |
| GO:0048635 | negative regulation of muscle organ development | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0005975 | carbohydrate metabolic process | biological_process |
| GO:0033333 | fin development | biological_process |
| GO:0031226 | intrinsic component of plasma membrane | cellular_component |
| GO:0048038 | quinone binding | molecular_function |
| GO:0016901 | oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1820264 | lncRNA | downstream | 94548 | 10820450 ~ 10820704 (-) | True | G1589642 |
| TU1820262 | lncRNA | downstream | 95002 | 10819659 ~ 10820250 (-) | True | G1589640 |
| TU1820261 | lncRNA | downstream | 95786 | 10819231 ~ 10819466 (-) | True | G1589639 |
| TU1820214 | lncRNA | downstream | 179119 | 10735912 ~ 10736133 (-) | True | G1589599 |
| TU1819957 | lncRNA | downstream | 241709 | 10665063 ~ 10673543 (-) | True | LOC110497361 |
| TU1820443 | lncRNA | upstream | 18921 | 10937716 ~ 10938850 (-) | False | G1589797 |
| TU1820445 | lncRNA | upstream | 18921 | 10937716 ~ 10938850 (-) | True | G1589797 |
| TU1820470 | lncRNA | upstream | 89683 | 11008478 ~ 11008690 (-) | True | G1589820 |
| TU1820495 | lncRNA | upstream | 121150 | 11039945 ~ 11040286 (-) | True | G1589845 |
| TU1820711 | lncRNA | upstream | 197090 | 11115885 ~ 11118971 (-) | False | LOC110497368 |
| XM_036954277.1 | mRNA | downstream | 17974 | 10879787 ~ 10897278 (-) | True | LOC110497364 |
| XM_021573432.2 | mRNA | downstream | 18944 | 10879787 ~ 10896308 (-) | False | LOC110497364 |
| XM_036954276.1 | mRNA | downstream | 50269 | 10832619 ~ 10864983 (-) | True | LOC110497363 |
| XM_036954239.1 | mRNA | downstream | 103803 | 10759730 ~ 10811449 (-) | True | LOC110498645 |
| XM_021573425.2 | mRNA | downstream | 166328 | 10739032 ~ 10748924 (-) | True | LOC110497360 |
| XM_036954282.1 | mRNA | upstream | 197084 | 11115879 ~ 11212125 (-) | False | LOC110497368 |
| XM_036954283.1 | mRNA | upstream | 197084 | 11115879 ~ 11212125 (-) | False | LOC110497368 |
| XM_036954284.1 | mRNA | upstream | 197084 | 11115879 ~ 11212126 (-) | False | LOC110497368 |
| XM_036954285.1 | mRNA | upstream | 201055 | 11119850 ~ 11212125 (-) | False | LOC110497368 |
| XR_005037660.1 | mRNA | upstream | 613469 | 11532264 ~ 11542073 (-) | True | LOC118941455 |
| TU1819455 | other | downstream | 769683 | 10136860 ~ 10145569 (-) | True | LOC110498432 |
| TU1818382 | other | downstream | 1946948 | 8967296 ~ 8968304 (-) | True | LOC118941443 |
| TU1818317 | other | downstream | 1961576 | 8902855 ~ 8953676 (-) | False | G1588003 |
| TU1818318 | other | downstream | 1961576 | 8948744 ~ 8953676 (-) | True | G1588003 |
| TU1817755 | other | downstream | 2580374 | 8243558 ~ 8334878 (-) | True | G1587567 |
| TU1820712 | other | upstream | 205593 | 11124388 ~ 11178117 (-) | True | LOC110497368 |
| TU1820805 | other | upstream | 351721 | 11270516 ~ 11270818 (-) | True | G1590098 |
| TU1821361 | other | upstream | 722612 | 11641407 ~ 11641866 (-) | True | G1590583 |
| TU1822015 | other | upstream | 1158923 | 12077718 ~ 12126489 (-) | False | LOC110497375 |
| TU1822002 | other | upstream | 1277300 | 12196095 ~ 12204414 (-) | True | LOC110497375 |
