RNA id: TCONS_00005960


Basic Information

Item Value
RNA id TCONS_00005960
length 3124
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id XLOC_002491
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 415997 ~ 421653 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTCAGAGACGAGAAGACATGACTGTGCGTTTGTGGATGTTTGCAGACATGGTCCCAGGTCTTTATTTACAGATTACATTCATAAATATAGGAAAGATTTACAGATATGTACATGTGTGATATCAGCATGTCTTTACAGAGTCCTGCGCAACAGCATCTCAGTATGAGCCTTGAGAATGTGTAGCCATCTTTGTGTGTTATCCCGCATAAGCAACATTCAGAGGTGAGGAATTAATGAGAGGGACTCTGAACTGCACTGATCACAGAATATTCATCAAGAAGCTGAACTGGAATGACAGATTACAACTGAAGCAAATCCACACAACAGGGAAATGTCATCAACCCTGCGGGTCAATTCTGGATAACGAAGCTTTCGCAGTAGTAGTCAGCAGTCGCCGGAAATCCCAGCTGTACCTTCTCCACGGGTCcagggctgcgtctgaaaccgcatacctCCATActgtatagtacgctaaaatcagtatgcgagccgagtagtatgtacaaattcatagaattcgaaaatcagtatgcgagtatGCTTCTCCCggcaagattctggagtgcgcatcccatgcctgctgcgctatcccatgattccccgcgagagaattcatgaatgggagtaaagcgacgcagctgacgcaggtaggtcgcgtgaccatgacaaaatggggAATTCCGTTCATACTTTtcccattcatactgtatagaacgtacttttccaacggctgagtagtatgtttaaattcaaatgcagtacctactgagtagtaggcggtttcggacgcagccaaggTTTGTGACATTTGTTATTGTTTCATTTGTTGACCTATTATAGAGCACTGAACCACTATAGGgccatctgactaatcagagcaagGTAGGGCCAATCAGAGAATGGTAGCAtcctctgaccaatcagagaagagtaggctcatttgaccaatcacaacTTGAGTAGGGGCAGAGTATGTGCATTTAGAGTAGGatcacctgaccaatcagagcacagtagaGCCACCTGACCAATTAGAGCACAGATGTCAAGGCCAGTTCCTGGAGAACCGCAGCTCTGCActctttagttccaaccctgctccaacacacttacctgtaggttttaagcaagcctgaaagactcaattagtttgatcaggtgtgtttaatgaggccctccaggaactggctttgataCCTGTGAATTAGAGGATGGTAGGCTCAGCAAGGTAGGTAGgtcttctgaccaatcacaacttGAGAAGGAGCAGAGTAGGTGCATGTAATCAGTCAGTGTTGAGTAGGGTCACCTGACTAATCAGAGCACATTAGAGTCACCTTTCCAATTAGAGGGTGGTAGAGTCAGCAAggtagggtcatctgaccaatcataaCTTGAGTAGGAGCAGAGTATGTGCATTTGACCATTCAGAGCTGAATAGAGTcacatgaccaatcagagcacattaAAGCCACCTGACCAAAGCCACCTGGTAGGGTCAGCAAGGTAGGGTCACCAGTCACAACTTGAGAAGGAGCAGAGTAGGTGCACATAACCAATCAGAGCTGAGTAGGGTCACCTGAACAAttagatcataggtctcaaactcgactCCTGGAGGAAGCTCtgcgcagttttgctccaaccctaatcaaacacagctgatccaaccaaTCAAAGTGCaggactactagagactattaagcaggtgtgagatggaggtggttggagctgaactctgaagagctgtggccctccaggaattgagtttgagaccaacATAAGAGCATGGTAGGTCTAAGTAGAGtgacctgaccaatcagagcatggTAGGGTCATGTAAACCAGGGCAGCTAGctgactcagtggttagctctgtcgccttacagcaagaagatggCTGTTTTGAGTCTGTGTGTGACTGCATCTCTCACACGGTGGTCATAACTTTGAGGGATCCGCTTCTGAACCTCAGGATCTTTTTCTTGAGCGCATGCGAGGCCTTGATCTTCACGAAGGCTTTGGGCTGCAAGTCTTGTCCATGTCCGGGTGGGTGTGACGGAGATGTAGGAGCCGGCTGCGGATGGAGCTGCTGAGGCCACACCAATCCCCCACTGCCATCAGAGTCGCTGGACAGAGAGCTGGAGCCGGGGGACTCGGCCTCGCTCAGGCTAGACTCAGACTCTCCCGGGACCGCAGTGTAGTCGCGGAGCTGAGGCTGGGGGTGATGCGGTGTGGGATGGGTGTATCCGCAGACGGGTCGAGCTCTTCGGGAGCGTCTGATTGGCTGTTCACTGGGTATCTCTGCTTCATCCTGACTGAGCTCCTGCGTGGATCGCCAACGTCTGCCCGAACTACGTCTGGCTTTCGGGACGCTCCGCACTGCGTCTCGCTCCACTGTATTATACCTGCGCTCTGAGACTCCGCGCTGACCCAGCAGGCTGTTCTCAGACTGTGCACGACAGGCTTTTCGTCCGGGTTTCTTCTGTGCATTCTTGTCCTCTGTAAACCGACACTTCTTAGGTGTGGCTCTTGGCTTCCTCTCTGGCGAATATGAGGATTTGGGGGATTTATAGGTCGTGGGTCTTGCTTGGGCTCGACAGGGCTGCGCGGGGATGTACTGTGCGTTCACCAGCTCATCAGAGgaaggagagtgtgtgtgttggtaGAAGTGTTGCGGAGACTCGGCTTCACTGCTACTGGGATCCAAAGCTCCGCAGGGGAAATCCAGAGATGTGGATGTGTGCATTCTGGGATAGCGGACTCCTGTGCACTCGTCTTCAGCCCACGCAAGTCTCTCCTGGACAAACGGTGGCTCTTTTCGGCTTAAGCTGCTCTGTCGGATCACTGCTCTGGGTTCTGGACTGAGGCTGGTGCGAGGTTTATTGGGTCTGGCAGGAGGCGAGCGCCGCTGGATCAGTCCGAGGATGTAGGTCTCCACGTGCTGTGCCTGTCTGTAGTCATCCACCGTGGGTTTTTCATCGATGTCCTCGATGGGTTGCCAGATCCACGGCTCATCCTCAGAGATGCCCTCTGCGATGCCCTCTAGTGGTGGATATGGTGCAGAGAGAGAGCGGGGAACTGCGGCGCGAATCCCCCCGATGCACACATCCCCTGCACAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005740 lncRNA downstream 57290 356555 ~ 358707 (-) True XLOC_002489
TCONS_00005739 lncRNA downstream 61340 354093 ~ 354657 (-) True XLOC_002488
TCONS_00005738 lncRNA downstream 106144 307849 ~ 309853 (-) True XLOC_002484
TCONS_00004649 lncRNA downstream 207411 207082 ~ 208586 (-) True XLOC_002481
TCONS_00005958 lncRNA downstream 235293 179863 ~ 180704 (-) True XLOC_002480
TCONS_00005741 lncRNA upstream 125284 546202 ~ 548200 (-) False XLOC_002492
TCONS_00005967 lncRNA upstream 125418 546336 ~ 548201 (-) True XLOC_002492
TCONS_00005968 lncRNA upstream 236133 657051 ~ 657406 (-) True XLOC_002495
TCONS_00005742 lncRNA upstream 1002323 1423241 ~ 1426474 (-) False XLOC_002499
TCONS_00005969 lncRNA upstream 1003810 1424728 ~ 1433140 (-) True XLOC_002499
TCONS_00004659 mRNA downstream 42422 360237 ~ 373575 (-) True XLOC_002490
TCONS_00004657 mRNA downstream 73433 323401 ~ 342564 (-) True XLOC_002486
TCONS_00004655 mRNA downstream 93228 311722 ~ 322769 (-) False XLOC_002485
TCONS_00004656 mRNA downstream 95844 311917 ~ 320153 (-) True XLOC_002485
TCONS_00004654 mRNA downstream 106103 304596 ~ 309894 (-) False XLOC_002484
TCONS_00004660 mRNA upstream 179246 600164 ~ 641609 (-) False XLOC_002493
TCONS_00004661 mRNA upstream 179507 600425 ~ 625441 (-) True XLOC_002493
TCONS_00004662 mRNA upstream 223656 644574 ~ 690170 (-) True XLOC_002494
TCONS_00004663 mRNA upstream 662043 1082961 ~ 1133162 (-) False XLOC_002496
TCONS_00004664 mRNA upstream 688885 1109803 ~ 1180314 (-) True XLOC_002496
TCONS_00004658 other downstream 75970 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 339806 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 341607 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004703 other upstream 2445802 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 2447560 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 3085622 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 3347733 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 4597640 5018558 ~ 5020500 (-) False XLOC_002543