RNA id: XM_036954311.1



Basic Information


Item Value
RNA id XM_036954311.1
length 4474
RNA type mRNA
GC content 0.50
exon number 11
gene id fbxw7
representative False

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 12526763 ~ 12624575 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAGCGAGCTCGTAGTGGACAGACCAGCATCAACAGAGCACCGTGAGGGTTGCATTAGTGTTTTCAAGAGCTCCAGAGAGAAGAGTCGAATTCCCCCCGGCCACTACGTACAACAACCTGCTCCCTGAGCCGACCCACCCCTGATTACCCCTCTGGGATATGACCTACTAGCCCCTGTTCTTGCAATGCTGAGGCATTGCCCCATACCCCTTTTCGCATCTTCCGGATCCCGAAAGAAGATGCCCAAGGCCTCTGGGAAAGAGAAGGCCCCCCTGGCAACACCGGAGAGCCAGGCCCTGGACATAGTGGCAGACCCAAAGGTGGTGGTCAAGGTGGCTAAGGAGCCACCACTGCCCCCGCAGAAAGTGCTCCGGCTCTTCAGCATCAACATCATCACTCAGGGGCTGCCCTTCTGTCGCAGACGGATGAAGAGAAAGTTGGACCATGGCCCAGAGGTCCGATCTTTCCCTTCAGGAAAAAAGCCCTGCAAAGGCTCCGAGTATCCAAGTGCTACAGGGCTGGTCCCCTACCCAGCCACCCCCACCACGTTTGGGCACATCAGGACAGCTAACGGTCAGGGGCAGCAGAGGCGGCGTATCAcctccatcccttctcccacAGGTCTCCAGGAATGGCTCCGGACATTTCAGAGCTGGAGTGGCCCAGAGAAGCTCATGGCGCTGGATGAGTTGATCGACAGCTGTGAGCCCACGCATGTCAAACACATGATGCAAGTTATTGAGCCGCAGTTCCAACGCGACTTCATCTCCCTGCTGCCCAAAGAGTTGGCCCTGTACGTGCTGTCGTTCCTTGAGCCCAAGGACCTGCTGCAGGCCGCTCAGACCTGTCGTTactggaggatcctggctgagGACAACCTCCTCTGGAGGGAGAAGTGCCGGGAGGAGGGCATTGATGAGCCTCTAGCCTTCAAGAAGAGGAAAATCACCAAGCCGGGCTTCACCCACAGCCCCTGGAAGTGTGCGTACATCAGGCAGCATAGGATAGACACcaactggaggagaggagacctcCGATCACCCAAGgtGCTTAAGGGTCATGATGACCATGTCATCACCTGCCTCCAGTTCTGTGGTAACCGCATCGTCAGCGGCTCTGACGACAACTCGCTCAAGGTCTGGTCGGCTGTCACAGGAAAGTGTCTGAGGACGTTGGTGGGCCACACGGGGGGCGTGTGGTCGTCCCAGATGAgggacaacatcatcatcagcgGCTCCACCGACCGGACGCTGAAGGTCTGGAACGCGGAGACGGGCGACTGTATCCACACCCTGTACGGGCATACCTCAACGGTGCGCTGTATGCACCTGCACGAGAAAACGGTGGTGAGTGGTTCTCGCGACGCCACGCTGCGCGTGTGGAACGTGGAGACGGGCCAGTGTTTACACGTCCTCATGGGCCACGTGGCGGCGGTGCGCTGCGTCCAGTACGACGGCCGCAGGGTGGTCAGCGGGGCCTACGACTTCATGGTCAAGGTCTGGGACCCCGAGACTGAGACCTGCCTCCACACGCTGCAGGGCCACACCAACAGAGTCTACTCACTACAGTTTGATGGGATCCACGTGGTGAGTGGTAGCCTGGACACGTCTATCCGGGTGTGGGATGTGGAGACGGGTAACTGCATCCACACTTTGACGGGTCACCAGTCCCTCACCAGCGGCATGGAGCTCAAAGACAACATCCTGGTCTCGGGCAACGCCGACTCCACCGTCAAGATCTGGGACATCAAGACGGGACAGTGCCTGCAGACGTTGCAAGGTCCCCACAAGCACCAGAGCGCCGTGACGTGCCTGCAGTTCAACAAGAACTTTGTCATCACCAGCTCGGACGACGGCACGGTGAAGCTGTGGGACCTGAAGACGGGCGAGTTCATCCGTAACCTGGTGACGCTGGAGAGCGGCGGCAGCGGCGGGGTGGTGTGGCGTATCCGCGCCTCCAACACCAAGCTGGTGTGTGCCGTGGGAAGCCGCAACGGCACCGAGGAGACAAAACTACTGGTGCTAGACTTTGACGTGGACAtgaagtgagaggagaggaggggaaatggtCGAGACGGGGACAAGTGACGGGAGGGTTAAAGGGAGACGAGGATGAGATGGCTCAACATCGAGGGTGAACGTGCCCTAAACTCTTCACTCCCACACTCAGAAACAGCCCCACCCtaccctcaacccccccccccttgcctctcccctccccccgtcGGTGGCCGTTTCTGACAAAGCCAGTCGCCAACCTCACCGGCCAGCACCCATACTTGTTACCCCTCCCACCTTAAGGGGGTGGGGTTCGAATCAGAAGGGGTGGAAGTGGGTGTGGCTTGGAACAGGGGTGTGGCTTGCCCGCACTTCTGCGGTAgactgggaggaagaggaagaagagggggaggaacagACTCGTCCAATAAAGGAGGAAGATAAGAAAGACAGGAACTCTTGAAGAAATAACTCTGCGGCTTTAGAGGCAGCTTCTTCGCAAAACAGAGACTTGTTCACTCAAGCCTGACGCAAGCATTTGTTCAGATGTATAAAGATATATCATTTTTTATCCCCCACGTAAAGCGCCAACCGACTAtttaatagaaaaacaacactgtatacagtacagtacacaaggCAAAGACACAGGGAAACATCAAATTCTCATCTGAGGAAATTAAGTGAATTGGAAAAAGGTTTtatgacaacacacagacacacaatattAGCTAAGTAAGGTTATTGTCGtcggggagagaatgagagaaacgACATGCCAAGAATCTGATTGATCCCCAAACCAGGTATGAGCCTATAACATCAGGCCCTATATCCTGTTCTCTGTTTGTTCCAGTCTTATTGTTCTTCAGTCTATTAGTTCCAGGGTTTGATTTCTTCAAAAAAACACACAGGAGCACACATACAACTGTGAATTTGCGTTCCTTTTGTAGCTATGTTCTTTCAATCAGTTCAAAGACGAGGAtttttgttgttcatttgttttttGGTTGCCTGTTGTTGCCAACAGCAACAAGTCCCAGTATTAACCTGTTCCACTCACTTCTTTCTTTTGTTATCTCACCACGTTTTATTTTCTGTTTGGGTTGTTCTTTACATTCTTCTTTTCTTCTTCATAGCTGAAGTCTGGAGACGTTAAGTCTTCAGATTTAGACACGATGCTGTCCTGTGTTTTTCAACGAGTCTGGCTGGGTTGGTTCCTCAATGCTGGTTCTTACgtggggggggggtttggggTTCTCTTCTCGGAACTCTTCGTGTGGAATagcgtcctccctccctcccagtactGTTTTCCCAGTGGGTAAACTGTATTTATGCTGCTAGATAAAACTGAAATAAAGATGGAACTTTTACTCGCTGTGACGTTTTAGTCCCAGACTAAATTCCAAAATGGACTCTTCTAATGTTTTAAACAGACGAcacacaaaagagagagagagagagggaaacatgacaataacaaccgtggttttgttgttttgtttctgcCACTGAAACTTTGAGCCAAACATGCCTCAGccaggctgagaggagagagagttggacaAAGACAGGTCTGCCTGCATAGGCTAAACGATAgggtgtaatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttgggcaAATTGTTAACACATTCCTTGGGACAAAGCGCTTTCAACCTGTTTTGTGGGGAACTGTCTAGATGCTGTGTGGACTGGCaaagagaaaaaagaaaatagcaaattatttttatttttttgttttgtttttttaaagagtgAATGAAAGAAAACTGTCCATCCATATGTGAtttgtttccattcaaatgtttGAAGCAACATTGTTGAATGGGCGCAAACTGACAACTACAGTAGAAGACAGGACAGTCTCAGTGTTAtaaatatgacatattacacgtTACAGTCAAACTGTTAAGCGCTAGCTAGCTCGCGTAGCAGTTAGCAGTCTAATGGTTTGTGAATGGAAAAAGTACCTACAGGCAACCTGGCTTCaagtgaacagaacagaacattgcAGCCAAAACGATTAGTTAATAAACTCAATCTCCCAAGAAAGGAGTCACACACAACTCAAGCAGAACTGTGAAAGTGGTTTAACACTGTAtattaaacaaaaaaaacaatcttgttctttctcctctctcgttTTATTTTTAATCTGTTTTAATTTATGATCTGGTTTGAGAAATCAGATGCCGCAGGTGTTTTTATTTTTTCAGTTCATTCATGTAACTGCCTGGCTAAAAGAAAACGGACAGAGAAAAAAAACCTGAAAGGGATTGTGTATTTGTTTGATTCAACTTAGAATTTTTATTTTCTTATAACTTAAGTGcaataaaatgtttgtttttttttttcattttttttttttcatttcagttGTCTGTTTTTCACTGTGTTATGTGTTCAATAAAACCTCTTCGGTTTATTACATTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1822648 lncRNA downstream 4179 12521763 ~ 12522584 (-) True G1591711
TU1822642 lncRNA downstream 12159 12514390 ~ 12514604 (-) True G1591707
TU1822636 lncRNA downstream 20026 12506461 ~ 12506737 (-) True G1591701
TU1822630 lncRNA downstream 26455 12500105 ~ 12500308 (-) True G1591695
TU1822625 lncRNA downstream 34588 12491968 ~ 12492175 (-) True G1591690
TU1822703 lncRNA upstream 53355 12677930 ~ 12678740 (-) False G1591763
TU1822705 lncRNA upstream 53355 12677930 ~ 12680593 (-) True G1591763
TU1822710 lncRNA upstream 73939 12698514 ~ 12698801 (-) True G1591768
TU1822778 lncRNA upstream 160394 12784969 ~ 12785181 (-) True G1591834
TU1822799 lncRNA upstream 167596 12792171 ~ 12792483 (-) True G1591847
XM_036954308.1 mRNA downstream 162769 12344938 ~ 12363994 (-) True LOC110497381
XM_021573453.2 mRNA downstream 225637 12277543 ~ 12301126 (-) False sh3d19
XM_021573455.2 mRNA downstream 225637 12277543 ~ 12301126 (-) False sh3d19
XM_036954305.1 mRNA downstream 225637 12277543 ~ 12301126 (-) True sh3d19
XM_036954302.1 mRNA downstream 265442 11933020 ~ 12261321 (-) False LOC110497375
XM_036954315.1 mRNA upstream 20745 12645320 ~ 12737217 (-) True LOC118941457
XM_021573462.2 mRNA upstream 117497 12742072 ~ 12767164 (-) True tmem154
XM_036954316.1 mRNA upstream 594492 13219067 ~ 13220997 (-) False LOC110497386
XM_021573467.2 mRNA upstream 594492 13219067 ~ 13221750 (-) True LOC110497386
XM_021573468.2 mRNA upstream 601594 13226169 ~ 13239221 (-) False LOC110497387
TU1822206 other downstream 274235 12251791 ~ 12252528 (-) True G1591322
TU1822002 other downstream 322349 12196095 ~ 12204414 (-) True LOC110497375
TU1822015 other downstream 400274 12077718 ~ 12126489 (-) False LOC110497375
TU1821361 other downstream 884897 11641407 ~ 11641866 (-) True G1590583
TU1820805 other downstream 1255945 11270516 ~ 11270818 (-) True G1590098
TU1823437 other upstream 601594 13226169 ~ 13239190 (-) True LOC110497387
TU1824132 other upstream 1200984 13825559 ~ 13827241 (-) False G1593032
TU1826921 other upstream 1858850 14483425 ~ 14483790 (-) True G1595424
TU1827387 other upstream 2635317 15259892 ~ 15260731 (-) True LOC110498659
TU1827710 other upstream 3175678 15800253 ~ 15901185 (-) True G1596136

Expression Profile


XM_036954311.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
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XM_036954311.1 Expression in each Bioproject

Bar chart with 12 bars.
XM_036954311.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
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