RNA id: XM_021573533.2



Basic Information


Item Value
RNA id XM_021573533.2
length 925
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC110497430
representative False

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17383975 ~ 17398168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCACCCCTAGCCCACTGTCACCCCCTCGTCTTGCGAGACAGTGATACAATAGTCAATCTAAACATTCGTAGCAACCGTTTTTTTTTGTGACAGCCTGGACCTACACGGTaattttgcaacaaaaaaaaggacCGTGTGTATCCAACAGGGGCTGTTTTCATCAAGGATGATGTCATCCACTGAGTCAGGAACAGATGTTCCTAAACTACATCGCCTTTTCATCATGTTTGACCCAGAGGTTGTAGCGGTGATGTCGATACTCCTGGGTCTATTCCAGGTGCTGTTGGCTGTGCCTCTGTACTACATAGACATTGGTTTACCCAAACTACAACTCACGCTCCCTTTATTTATTGGCTTCCTGTTTGTGATGGCAGGGTCGTTCGCCTTCGCCTGTGAGAAGTCTCCCAGCAGACAGCTACTGACAGGCTGTGCCTACACTAACGTGGCCAGCCTGGTGGCGAGCCTACTGGCTCTGTGTTCGTACAGCGTCTCCCTACACTCCGTCCAGGGCTCTGCTGCACCCTGCACTCTGCCAAGCATCGACCTGTACACATGGGCTGCACAAAAGTGCCCAGGAGAGTACCTAGAGGAGTTCTTCAGGAGTATCATAGTCCTACTCATCGTTTATGACTTGGGTGCTCttaccctccactctctcctctctttctccgcaCTCAAGGGACTCGGAGTGAGACTGTGCCGAATGATCAATTAATCAATTATTCAAACTGATTAACCAATGGATGCTAGTTGAAAAACCTGTTTTAGAAAAATAATGATCTGTTTAATAAAAAATTTCTCAGTGACCACATTTCTTTTAACTTGTTTAAGTTCAAGTTTGTTTATTTCATGGGTTTGTTTGTTCCTTTCGATCTTTACAGGCTTACAATGTTTTGAGAAACCTAATAAAATAATTTGTATAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1828582 lncRNA downstream 4609 17379102 ~ 17379366 (-) True G1596913
TU1828576 lncRNA downstream 15963 17367745 ~ 17368012 (-) True G1596907
TU1828572 lncRNA downstream 29481 17354290 ~ 17354494 (-) True G1596903
TU1828569 lncRNA downstream 55209 17328561 ~ 17328766 (-) True G1596900
TU1828547 lncRNA downstream 97837 17285897 ~ 17286138 (-) True G1596878
TU1828495 lncRNA upstream 18802 17416966 ~ 17422180 (-) True LOC110497432
TU1828609 lncRNA upstream 39095 17437259 ~ 17437495 (-) True G1596939
TU1828640 lncRNA upstream 75000 17473164 ~ 17473766 (-) True G1596964
TU1828617 lncRNA upstream 77041 17475205 ~ 17478023 (-) True LOC110497438
TU1828655 lncRNA upstream 123057 17521221 ~ 17530745 (-) True G1596970
XM_036954355.1 mRNA downstream 5181 17369814 ~ 17378794 (-) True LOC110497429
XM_036954353.1 mRNA downstream 5385 17369814 ~ 17378590 (-) False LOC110497429
XM_036954354.1 mRNA downstream 5390 17369814 ~ 17378585 (-) False LOC110497429
XM_021575217.2 mRNA downstream 17670 17359938 ~ 17366305 (-) True LOC110498555
XM_036954352.1 mRNA downstream 57567 17309414 ~ 17326408 (-) True LOC110497427
XM_036954357.1 mRNA upstream 22649 17420813 ~ 17436208 (-) False LOC110497432
XM_036954358.1 mRNA upstream 22649 17420813 ~ 17436211 (-) False LOC110497432
XM_036954365.1 mRNA upstream 77039 17475203 ~ 17490454 (-) False LOC110497438
XM_036954364.1 mRNA upstream 77039 17475203 ~ 17494216 (-) False LOC110497438
XM_036954363.1 mRNA upstream 77039 17475203 ~ 17494526 (-) False LOC110497438
TU1828548 other downstream 95958 17286530 ~ 17288017 (-) True G1596879
TU1828525 other downstream 140952 17242606 ~ 17243023 (-) True G1596856
TU1827419 other downstream 452525 16928379 ~ 16931450 (-) True LOC110498506
TU1827310 other downstream 795808 16584663 ~ 16588167 (-) True LOC110498466
TU1827269 other downstream 943003 16439642 ~ 16440972 (-) True LOC110498461
TU1828610 other upstream 39500 17437664 ~ 17437878 (-) True G1596940
TU1828650 other upstream 96505 17494669 ~ 17499443 (-) False G1596970
TU1828651 other upstream 96505 17494669 ~ 17499443 (-) False G1596970
TU1828656 other upstream 96505 17494669 ~ 17499443 (-) False G1596970
TU1828776 other upstream 217798 17615962 ~ 17623476 (-) False LOC110497446

Expression Profile


XM_021573533.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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XM_021573533.2 Expression in each Bioproject

Bar chart with 19 bars.
XM_021573533.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.