RNA id: TU1829133


Basic Information

Item Value
RNA id TU1829133
length 2371
lncRNA type sense_over
GC content 0.43
exon number 2
gene id zdhhc5a
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17750224 ~ 17791565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctggtgaaaagtagtacactatataggggatagggtgccatttagtacACACACTACGAGTGTGTGCTCTTTCTCTCCAACGTCTTAACTAATCCTTCTTTCCCTCccatctctcgttctctctatccAGGGATGAGATTCAGATGAAGTTGCTCAGCCGGACGAACGGGCAGCCCaggtcctccctttcctcctcaggctccaccccttcctccccctctcacccaATCAGCATGTCCACTCGCCCCGGACAGGCCTATCCCAGCCCTGGAAACACCCAGAGCCCCGCCCACAAGCTGGGGGGCGGGGTGAAGAAGGTGACGGGCGTCGGCGGGACCACCTATGAGATTTCAGTCTGAGTTTGACGGGCGGCCACTCCGACTAATGGTGTCAGGCGTTGGAGGTGAaggaggggtcagagatggaCTGATGATATTTCTGCCTCTCGGGCCCTTCAGGAGAGAGGAAAGCTTTTAATGAACAGACGTTTTAAAAGTTGCTCTTCTTCCAAATGCGATGGACTCCGGACTTCCTCTCTCATTCAGAGACCTCCAGTCAAGGAACTACAGAACTAATCGGGAGGAAGTTGTTTAACCAGTCACATTCAAGAACACAATGCACCATTATGACATTGTGGGCGTATGGGCCAAGGGATCCAATTATACCCCTTAAGAGGCGGGACTCTTTGACAATCCACCAATTTCTGGACGGGTTGAACTCTGTGGGAATGATTGAGTGACAGTTATGACTGGGTTTGCCTTTTtttttttttttaccaatcagatcagctctgaaaaagagctgATGTAAAAGGATCTGATTGAGCAAAATAAATCTTAATTGGGCTGCCTGGGtaaagtctttttttttttaagaaaagaaatgtactttcattCATTCATAAATGTGTAATGATTCATTCTCTGTACAGAATTATATGGTTTGGAATTTATGGTGATTTCCTCCAATCAGTGGCATTTAAAGGTTACAGTGGCACGCTCCGGCCACTATTGACCACTGTGATTGGCTAGTGATCTCGCTGCCATTCTCTCTCGACCAATCAGAAATGGAGATGCTAAACTGTAGTAGACGGCAGGGTCATTGGTAGAGTTCGTTTTGCCCGGCTCAGTGCCCCGGGTGGGTGGAGATTTTTCttaaggaccaatggaatggttaaaaaatatatatatcgcTGGGTCTGTACTTTAAAGATGGAGCGGCCTTTTCTAAACAAACTTTAGAGCAATGGCCTTGAAAATCAAGAAGAtaagtgttttttattttttttattttacatatttaatttcaaaatgttattttatatgaatttctctctctatatatatatagctgtTGATAAGATCAATATTTTTTTGAATGGCCTGAAAGGGGTTTTTCTGGTTTGAGTTAATTTCAGAATTGTAACCAAAACAGGGGAAAACTGTTGCCGTGTTCATGTTCTAGTCGGAACTTGGACATTTCTAACTGGCTAACAAGTGCCGCGTCGAAAATgtcagtttcctagttccgatTTTAGCGCTAGAGCGCGGCTCAGTTGTATTGATGGCTGCACCAGCCAATCAGAGGCTGGGTTTTGAGTCTTCCCGCCAAAGAGAGTAGCTGGACAATTGTTATATGGTTCAGCTAATGGGAACCAATGTATATGATAAAAGGCCATGTAGCATTTTAAAGTCCTTTGATACACAGTAAACCACTCGACTTCTCGTGGGGCATATTTCAGAGACAAGTTATCGTTGTACCTTCTGGTTGTTTACTTCTGAGCTTTGTAATAatttgtctgaaatggcaccctattcactatatagtgcaccacttttgaccaggacctataaggaatagggagccataacacacacaaccAATGTTTCGTTTTATTGGTCCAGATAATGACGTCTCCGGTTGCCACTAGCTGACCTATCTGGAAACTAGCGAGGATCACATGCTTTGCCGTGACCAATCCGTAGAGAGCAAGAGATTCATTTCAGCCTACTCTTTTATTCGTTAACGGTTAAACCAATGAGATGGACAGCTGAAAAAAAGTCAGTAACAtcctttttatatttattttttactttcctTTGCAAGATTTTTAGGACAATTTACAGGGCATTGCTATAAACCGACAGTTTGTTTGACCAGTCAGGAGAGTAGAATGAAACTAAATGGGCTAGGACTAAAAGAGCACGTCGCCCAATAAGGCAAAGACGTTTGACTGCCATCAGGAACAGCCAATGCCCTTGCAGATGTTTAGACAAGTACGAGCCCGGGACTTGGGTGttttgaaataaaaataaataaaaagatatgtactatatagctgtgtgtgtgggcgtgtgcgTCTGTGAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1829135 lncRNA downstream 504 17748213 ~ 17749753 (-) True G1597392
TU1829128 lncRNA downstream 12542 17737388 ~ 17737715 (-) True G1597388
TU1829127 lncRNA downstream 13890 17736163 ~ 17736367 (-) True G1597387
TU1828856 lncRNA downstream 56464 17693228 ~ 17693793 (-) True G1597144
TU1828849 lncRNA downstream 63417 17686550 ~ 17686840 (-) True G1597137
TU1829136 lncRNA upstream 1258 17753946 ~ 17754396 (-) False zdhhc5a
TU1829140 lncRNA upstream 5401 17758089 ~ 17758401 (-) True G1597397
TU1829134 lncRNA upstream 26491 17779179 ~ 17791508 (-) True zdhhc5a
TU1829151 lncRNA upstream 46283 17798971 ~ 17799202 (-) True G1597408
TU1829170 lncRNA upstream 71543 17824231 ~ 17827073 (-) True G1597426
XR_005037846.1 mRNA downstream 53715 17696356 ~ 17696542 (-) True LOC118941549
XR_002469675.2 mRNA downstream 128871 17615897 ~ 17621386 (-) False LOC110497446
XM_036955482.1 mRNA downstream 137155 17605072 ~ 17613102 (-) True LOC110497445
XM_036954369.1 mRNA downstream 149903 17579441 ~ 17600354 (-) True LOC110498667
XM_021573547.2 mRNA downstream 195307 17547793 ~ 17554950 (-) False LOC110497443
XM_021573556.2 mRNA upstream 96154 17848842 ~ 17851818 (-) True LOC110497450
XM_021575219.2 mRNA upstream 120947 17873635 ~ 17875393 (-) True LOC110498557
XM_021573557.2 mRNA upstream 139953 17892641 ~ 17903484 (-) True LOC110497451
XM_021573559.2 mRNA upstream 160235 17912923 ~ 17920701 (-) False LOC110497452
XM_021573558.2 mRNA upstream 160240 17912928 ~ 17920708 (-) True LOC110497452
TU1828776 other downstream 126781 17615962 ~ 17623476 (-) False LOC110497446
TU1828650 other downstream 250814 17494669 ~ 17499443 (-) False G1596970
TU1828651 other downstream 250814 17494669 ~ 17499443 (-) False G1596970
TU1828656 other downstream 250814 17494669 ~ 17499443 (-) False G1596970
TU1828610 other downstream 312379 17437664 ~ 17437878 (-) True G1596940
TU1830226 other upstream 1011027 18763715 ~ 18764422 (-) True G1598418
TU1830958 other upstream 1456604 19209292 ~ 19209964 (-) True G1599097
TU1831082 other upstream 1619621 19372309 ~ 19381751 (-) True G1599197
TU1831662 other upstream 1802909 19555597 ~ 19557357 (-) True G1599717
TU1831722 other upstream 1883330 19636018 ~ 19637027 (-) False G1599760

Expression Profile