RNA id: XM_021573556.2


Basic Information

Item Value
RNA id XM_021573556.2
length 2977
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110497450
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17848842 ~ 17851818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAACTATCAAGAGCTGACTCTTTCCAGGAAATCATTTATAGTTCCGCCTTCTTTCTAGATATGGCTTCCTCCAGCAGTCTCCTGTCTGAAGAGCAGTTTCTGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCTCCACTTCGTGTGGACACAACTTCTGCATGGCCTGTATAACAAAGTACTGGGATAGCAGCGACCTGTGTCAATGTCCACTGTGTCAGGAGAAATTCTCCAGGCAACCTAAGCTTCGTGTCAACACAACCTTCAGAGAGATTATAGAGAATCATAAATTGTTGAGAGACACAGGTAAAGATGAGTCCCCTGCCAAACCTGGAAAAGTGCACTGTGACGTCTGCACTGGGACGAAGCGCAAGGCCCTGAAGTCATGCCAGGTGTGTCTGGCATCTTACTGTAAGACTCACCTGGAGCCTCATCAAATATCCCCAGCATTCAAGAGACACAAGCTGATCGACCCTGTGGAGGACCTGGAAGACAGGATCTGTAAGAAGCACGACAGACTCCTGGAGCTGTTCTGTAGGACTGACcagacgtgtgtgtgtcagttctgCACTGAAACAGACCACAAGACTCATGACACTGTTCCTATAGAGGACGAGTGTGGAGAGAGGAAGGCTCAGCTGGGGAAAACTGAGGCAGAAGTGCAGAGGATTATCCAGGAGCTACTGCAGAAAGTTAAAGAGATTAAACTCTCAGTACATCTCAGCAAAAGAGATGCAAAGAGGGAGATAGCAGACAGCATAAAGGTCTTCACTGCTCTGGTGCGCTCCATTGAGAAAGGCCAAGCTCGGCTCATTGAGGAggttgaggagaagcagaaagcagTAGAGAGGCAGGCTGAAGGGCTCATTAAAGAACTAGAGCAGGAAATCACTGAGCTAAAGAGGAGAAGCACTGAGCTGAAGCAGCTCTCACACACTGAGGACCACCTCCAACTTCTCCAGAGCTTCACATCCGTGGTGTGCACCCCTCCACCCACCAAggactggtctgagatcagtgtTCACAGGGCTGTGAGGAGAGCTGTGTCTCAGCTGGAGGAGACATtgaataaagagatggagaagctGCCTGAGGTCAAACTGAAGAGGATTCAGCAGTATGCAGTGGATGTGACACTGGACCCTGATACAGCAAATCTCTTTCTCATCCTGTCTGACAATGGGAAACAAGTGAGAACTGGAGACACGGAACTGAATCTTCCGGACAATCCAAAAAGGTTTGATCGTTTTATCGTTCTCCTTGGAAAGGATGGCTTCTCCTCAGGGAGATTTTACTATGAGGTGACGGTTAAGGGTAAGACTAGGTGGGATTTAGGAGTTGCCAGAGAGTCCACTGACAGGAAGGGGGATATCACACTGAGCCCTGAACATGGAGTTTGGACTATGATGCTAAGGGATGGGAATGAGTACACAGCCTGTGCCTCACCGCAAGTCCGTCTCTCCCTGAGCGAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTGTGGTCTCTTTTTataatgtggaggccaggtctcaTATCTACTCTTTCACTTGCTGCATCTTTACAGAGAAAATCTACCCATTCTTCAGTCCCtgtagtgatgatagtggtaaaAACGCAGCTCCTCTCGTCATCTCTCCTGTCAATCACAAATACTGATTAAACAAAGGACTTAATCTttctttaaagctgcaatatgtaactttttgggcgacccgaccaaattcacaaagaaatgtgagttatagatctgtcattctcattcaAAGCAAGTATAAAAAGCGGTAGATCTGTTGTATGTGcattatttctatgcttcccgttatTACATTTCATTTTGGCATCTTTTACTTTCAGGTTTTGTACACCACctccaaacagctgaaaatacaatattttgggatgtggaaaatatatttcacagcggtttagatggtacaatgattctcaacACTATACTTGCTTTTTTTGGGTcaaaaactgaaattaggcgaactattagaattttagcaagcAGGAAACGGCAGAGTGATTTCTTTATTGTGCATCTTTAAGCTGGTTGTTGATACTGTATACGTGAAAGTGATAAAGGACTTACTTTTCCTTTGATCTGGTTGTGGATGTAGGTTATTGTGAAAAAGGACTTTAAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTAAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGTATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTAAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTGTTGATACTGCATAAGTGAATGTGGTAAAGGACATACTCAGCCTTTGAGCTGGTTCCACAGTACTGTACTTCGATAAAGGGCATACTTTTCCTTGGAGCTGGCTGTGGATCTAAGACAGTGTGTGATAAGGGAAATAATGTGCCTATAAGCTGGTTGTTGGTTTAGGAAAGTGACTGAAAAGTGACTGAATATGATAAAATACATACTTTTCTTTTGAGCTgatggtacagtgccttcagaaagtactcataccccttgacttattccagatgttgttgtgttacagcacaaactcaaaatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1829170 lncRNA downstream 21769 17824231 ~ 17827073 (-) True G1597426
TU1829151 lncRNA downstream 49640 17798971 ~ 17799202 (-) True G1597408
TU1829134 lncRNA downstream 57334 17779179 ~ 17791508 (-) True zdhhc5a
TU1829140 lncRNA downstream 90441 17758089 ~ 17758401 (-) True G1597397
TU1829136 lncRNA downstream 94446 17753946 ~ 17754396 (-) False zdhhc5a
TU1829197 lncRNA upstream 6457 17858275 ~ 17869467 (-) True G1597450
TU1829288 lncRNA upstream 154986 18006804 ~ 18007008 (-) True G1597538
TU1829382 lncRNA upstream 266027 18117845 ~ 18118182 (-) True G1597610
TU1829401 lncRNA upstream 283836 18135654 ~ 18135888 (-) True G1597629
TU1829404 lncRNA upstream 285881 18137699 ~ 18137917 (-) True G1597632
XM_036954373.1 mRNA downstream 57277 17750224 ~ 17791565 (-) False zdhhc5a
XR_005037846.1 mRNA downstream 152300 17696356 ~ 17696542 (-) True LOC118941549
XR_002469675.2 mRNA downstream 227456 17615897 ~ 17621386 (-) False LOC110497446
XM_036955482.1 mRNA downstream 235740 17605072 ~ 17613102 (-) True LOC110497445
XM_036954369.1 mRNA downstream 248488 17579441 ~ 17600354 (-) True LOC110498667
XM_021575219.2 mRNA upstream 21817 17873635 ~ 17875393 (-) True LOC110498557
XM_021573557.2 mRNA upstream 40823 17892641 ~ 17903484 (-) True LOC110497451
XM_021573559.2 mRNA upstream 61105 17912923 ~ 17920701 (-) False LOC110497452
XM_021573558.2 mRNA upstream 61110 17912928 ~ 17920708 (-) True LOC110497452
XM_021575222.2 mRNA upstream 119913 17971731 ~ 17976721 (-) True LOC110498559
TU1828776 other downstream 225366 17615962 ~ 17623476 (-) False LOC110497446
TU1828650 other downstream 349399 17494669 ~ 17499443 (-) False G1596970
TU1828651 other downstream 349399 17494669 ~ 17499443 (-) False G1596970
TU1828656 other downstream 349399 17494669 ~ 17499443 (-) False G1596970
TU1828610 other downstream 410964 17437664 ~ 17437878 (-) True G1596940
TU1830226 other upstream 911897 18763715 ~ 18764422 (-) True G1598418
TU1830958 other upstream 1357474 19209292 ~ 19209964 (-) True G1599097
TU1831082 other upstream 1520491 19372309 ~ 19381751 (-) True G1599197
TU1831662 other upstream 1703779 19555597 ~ 19557357 (-) True G1599717
TU1831722 other upstream 1784200 19636018 ~ 19637027 (-) False G1599760

Expression Profile