RNA id: XM_021575222.2


Basic Information

Item Value
RNA id XM_021575222.2
length 2010
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110498559
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 17971731 ~ 17976721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGGGCCATTTCGGTTCAGGGTCCAAACGTGCTGCAAACCGGCTTTCACCCCAGAGATCAGCATGAGAAGACGAAGCTCCTGCACACCTGAGGCCCCTCTGTCTCCAAGAGAAGGCAACGAGGTTGAGTGGACCACACCAGTTTCACAGCACGTGAAGAGAACGCAGCCTCTTCTTCATAACTGTAACAGCAAATCAGGGATACCTTCAGAAAAGTTGGACAATGTTTCATTGATGAAAGAAACAAATAAATCAGAGATGCATGGAGCATCCTACAGGCATTCACCGAGGGCTTTTGACTCTGACTGCTCCCCGAGACGTAGTGGCTCAGGAGACCGAGCACTCGGAGCAGACTACAAATCTGAGATGATATTCGATTTGGAGAATACGGTGGACAGACTGAAAAACGCTCTGGTATCACTGGAGGAGGACAACCTCAGCCTCAACAAGAAGATAAGAGAAAACATGGCAGAAGACCGCCCATTTTCAACCAATCACAATGTCTCAGGCTCAACAAGTGGCAGCAATTCACAGAAAATGCCTGGTGGTCACACTCACAGTCCCACCTCCAAACTCATTACACACCCTGTCACTTTCAACATGGCCAAAACATACCCAGAAAGTCAGAGGCAAGATACACCATCCAAGATCGAGGAGACTAGGACTAGAGAGATGCTCAAAATGGAGAGCCTGTCCTTGGAAGACAGGTGTGTTTACTTGGAGAAAGAGAAACGGGACTTGCAGAGGAAGCTGCAGAAGACAGAGGACTACTGCAAAGATTGCGTCCGCGAGCTCAAGAGGATCCTCCCAAAGTATGAGGACCTCAAAGCCTCGAATAAAACCCTGGATAAGCTCAACAAGCAACAGGCTGCAGAGAACCACAGACTCGTCGACGCCCTTGAGGCCGGGAGCCAGGCAGGGGAGAGATCCAGGGATCACCACCTGGCTCAGGAGCCTAAAGAAGGGGGTAGTGACAACAAGGTGCGGGTTCAACTAGAGAGGGCCAACGATCTCTGCACCCAGCTTACCCAGGAGAAGGGGCAGCTGGAGGACCGGATGGCCTCGCTGGCAAGGGAGGTCAGCCACCTCACGAATGAGCTGGATATGAGCTGGCCCGAGCTCCATCGGCTGGGGTCCAGGAGGAGAAGCTCCCTTGAGGGGAGCACAACTAGGGACGGCAGCACTCTGGCCTCGTTGGCCAACAAACACCCGGCCGAACGCATCCTGGACAGCGTAGGGAAAGAGTGCAAGGCCACGTCGGGCGCCATGGCCCATCTCAAAGAGGAGAACAAGACACTACGAGAGAACCTCAAACAGAGCGTCAAGAGGGGCGAGGAGGCAGAGGGCGGAGCCAAGCAGCTGAGGGAAGAGCAGGCCATATTAGAAAGCTGCCTGCTCACGGTGCAGAAGGAGAAAGACCTGCTTCAGCTGGAGGTGCGGCAGCTCCACCAGGAGTACATCGAGCTCAGCAGTAGCATCTCGCTGCAGCTGAGAGAGAGGAGCCCCGTCGCCAGTACCAGGATATTAGCAGGGTCACATGTGGTGACTGATGGTAGTGATAGTGGAGCCAGGCAGCAAGAGAGTCCAAGGCAGCCTCTGAACAGCAGCCCTATTACCAGAGAAATGCTGGATGGCCCTGTAGGCAGAGAGGCAATTGTTCATATAAGGAAGCGTTtcgaggaggaggagcagagagccCAGAGGTACAAAAACATCATCAATCAGAATGAATGAGGCTGAAGCTGGAATAGCGGGCCAGGCAGACTGGATGTTGACCTCTACCTCCCGTACCACGAGGGGTCAGGAGAGGTGAAGCATACTGTAGCCTACCGTAGAGCTTGTTGCATCACTTTACCAACAATATGCCCTTCACAAGGTCATGTACCGTATGCACTGTACAGATTTTAATTCCCTGATTATATTATGCTTTTCAAAATATTTTGTCAGTGTTATTTATCATTTATAATAGTTTTTAGATAAATGACATGTCAAGGCAGTTTGTGGCTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1829197 lncRNA downstream 102264 17858275 ~ 17869467 (-) True G1597450
TU1829170 lncRNA downstream 144658 17824231 ~ 17827073 (-) True G1597426
TU1829151 lncRNA downstream 172529 17798971 ~ 17799202 (-) True G1597408
TU1829134 lncRNA downstream 180223 17779179 ~ 17791508 (-) True zdhhc5a
TU1829140 lncRNA downstream 213330 17758089 ~ 17758401 (-) True G1597397
TU1829288 lncRNA upstream 30083 18006804 ~ 18007008 (-) True G1597538
TU1829382 lncRNA upstream 141124 18117845 ~ 18118182 (-) True G1597610
TU1829401 lncRNA upstream 158933 18135654 ~ 18135888 (-) True G1597629
TU1829404 lncRNA upstream 160978 18137699 ~ 18137917 (-) True G1597632
TU1829411 lncRNA upstream 167926 18144647 ~ 18144964 (-) True G1597639
XM_021573558.2 mRNA downstream 51023 17912928 ~ 17920708 (-) True LOC110497452
XM_021573559.2 mRNA downstream 51030 17912923 ~ 17920701 (-) False LOC110497452
XM_021573557.2 mRNA downstream 68247 17892641 ~ 17903484 (-) True LOC110497451
XM_021575219.2 mRNA downstream 96338 17873635 ~ 17875393 (-) True LOC110498557
XM_021573556.2 mRNA downstream 119913 17848842 ~ 17851818 (-) True LOC110497450
XM_021573562.2 mRNA upstream 3335 17980056 ~ 18005750 (-) True LOC110497455
XM_036954379.1 mRNA upstream 30936 18007657 ~ 18094527 (-) False LOC110497456
XM_036954377.1 mRNA upstream 30936 18007657 ~ 18094529 (-) False LOC110497456
XM_036954378.1 mRNA upstream 30936 18007657 ~ 18094529 (-) True LOC110497456
XR_005037600.1 mRNA upstream 169437 18146158 ~ 18149719 (-) True LOC118941355
TU1828776 other downstream 348255 17615962 ~ 17623476 (-) False LOC110497446
TU1828650 other downstream 472288 17494669 ~ 17499443 (-) False G1596970
TU1828651 other downstream 472288 17494669 ~ 17499443 (-) False G1596970
TU1828656 other downstream 472288 17494669 ~ 17499443 (-) False G1596970
TU1828610 other downstream 533853 17437664 ~ 17437878 (-) True G1596940
TU1830226 other upstream 786994 18763715 ~ 18764422 (-) True G1598418
TU1830958 other upstream 1232571 19209292 ~ 19209964 (-) True G1599097
TU1831082 other upstream 1395588 19372309 ~ 19381751 (-) True G1599197
TU1831662 other upstream 1578876 19555597 ~ 19557357 (-) True G1599717
TU1831722 other upstream 1659297 19636018 ~ 19637027 (-) False G1599760

Expression Profile