RNA id: XM_036954379.1


Basic Information

Item Value
RNA id XM_036954379.1
length 8759
RNA type mRNA
GC content 0.54
exon number 28
gene id LOC110497456
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 18007657 ~ 18094529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAACATCATCATCCTCGCATACAACCGCCCTTTCCCTGGGAAACAATGAGGCAGGCTTGAGCGATTGGATATCTGATAAACGCGAGCTGTTCCTGGGCTGTCAGATCCGGGGCACCCAGCAACGACGCACAGAGCATGCGGAAAAAAATGTGAGCGctcgtctcctcctcttcagccAGCCCCTATTCAGTCAAGAGGTGTTGTCGTGGTGGGACGGCGTTTTGCCAGGAGTAAAGGGACAGTTTTACTGCAATGCTTTCTCCATAGCTCCGAGTGAGAGCAAGTTACCCGGGAGAAAGGGTGTTGCCTCGCTTTTGCCTGGCCGCACCGTGCACTAGCAACGTCCATGCACGTTTGCTTATTTGAAATTGGACCGAGCCAATTGAGGACGTCGAGGCAGGTGTGCGGTGTCATTCGGAATTGTTCTTGGTAGACGCTGTCCATTTTCCCGTCTCATATCAGATTTGTATGGACTTTAATTCCGGTCAAGCAGGCCCCTGTCGACTAGGTTGATACAGTATTTTGTTGCAGAGCGAATTTCTTCAGATGTCTCCGCGTTCGCTTTGAGGAACGGACAGACTACTCTGGATTTAAAGCCTGAGGTGGAGTGTGGAATTGTGATCGCCGATGTCCGTCTAACCCAAATAAGTCTCCCTGCTTTTTGATTTTTATGACGGAAAGTGTACCCAGCGACGGTAGAACTGTTAGGAGAACTCTTCAACATGAATACAGATAGCGGAGGACACACTCGCAAAAGCACCGCCTTGCTAGTCACCCGCTCCCACATGAAGCGGGTCCAGAGTGTCCCGAATCTGGCTACAgGGAGCGAGTCTCACTCGTCAGATTCAGatgCTTGGAGGTCACGCAGCACCGATGGCCTAAGGAACGGCGACGACATCACTTCCTCCTTGGCCGCGAAGGGCTTCCGCAGTGTCAGGCCCAACCTGCAAGACAAGAGGTCCCCCACACagggcCAAGCTATTCAAGTGGCAATGAATGGAGGTGCGCCCCACCCCCAGAGACCGTCCTCACCCCCGGCCTACCCCCATCTCCCTGCCTCGTTCAGCCCAGGAGGAGTTCACGTGCAGAGTCGGAACGCAGaaGGTTCAGAGTCGGTGATGTCGGGCCACACCAGCATGAGCAGCACGGTGCCCATCGCCCGCTTttcagaggaggagaagagggtgtcGGTCATCAAGGCGCCCCACTACGAGGGCATCGGCCCCGTGGATGACACGGGCATCCCCATCGCCATTCGCACGACGGTGGATAGGCCGAAGGACTGGTACAAGACCATGTTCAAGCAGATCCACATGGTTCACAAAGCAGGTGGGCAGAAGTGCACTAGACCGGAGGAGACGGTACAGTGTGTCCATTGCAATGACGACTATGCCGACGCGCACAACGCCACATACACTGTCATCGGTGACAGCGacacACATGGTCAGTCCTCCAACCCCACCATGGCATACCCTCCCCCCAGGACACAAACGTACCGGCCCCTGGCCAAGAGTCCGTCGGGCAGCGGAAGCCCCGGGACCTTTAGGGAGCCCTCCCCCGTGCCTCCGCCACCCCCGCCCATGCCCTCCCTCCTCCAGCTGAGGTCCAGAGACAGCGACCGGGAGCGAGACTCGCCCGACACCATcaGGAATCAGTGGGGCCCTCCCGATAGGAAAGTGGACACTAGAAAGTACCGCGCTGAACCCCGGAGTATCTTTGAGTACGAGCCTGGGAAATCATCCGCTCTGGAGCAGGAGAGGCCGacCTATAAGCTAAACCCAGATGACATAGATTTAGAGAACGAGCCTTGGTATAAGTTCTTCTCCGAGCTGGAGTTCGGCCGTCCGCCTCCTAAAAAACGGCTGGATTATAATCCAGACATCTGCTCTGGCCGACTCACCGAGACGTCGCTGTACTTCACTCCCACTGCTGACCGGGTTCCAGAGAGGCCGGCGAGTGCTGCCAGTGActacaggaagaggaggaagtcGGAGCCTTCGGGTGACCAGGGCAAGAACCAGGTCTCCCCAAAACAACTGGACCCTTACAGAGGCAGCAGCACACTGAGGAAACCAGCCATAcgctccttcccctcctccccctccagagCCAaagGTGGGGACGCGTGCGACATGACCTGCTCCCCCCGTTTGAGCTCTTCCCCGGGCCCGTACCTccgctcccctctctcccccgtgCCCTCCAACCTCGCCCACCGTCGCGACATCGACGGTGCCAACCCGGGGGCTGCCTCCTCGCCCCTCAAGCGCGTCACCTGCTTCAAGAATGGCTGGCAGACGCGGCGGCAGGACGCCGAGACATGGAGCAGCGCCGAAGACGCGCCGCCCGCAAAGCTGAGGTCGCGTAGCTGTGACAACCTGCTCAACGACGGGCACCCGGGCGGCACCGGCGGGCACAAGGCTACCCGTTCGGAGAGCGCCGGGTCACTGGTATTCGACAACCCGTTGCGGCAAACCGCATCGTCCTCTACCCGCTCCTTGCCTCGCCCGCACCGGCGACGTGCCCACGACGCGCCAGGCTTCCTGAAGCTCTACCGCAAGATGCACCACATCGACCGCGCCCAGCTGCTGCCCTCTGACGTCATCCGCTCGGTCCGTGTCCGCATCCTGGAGCTGGAGCGCCAGCCGCACCTCTTCCCCCGAAAACTCTCCCCCTGGGGGCCGTCGTGGGGCCTGGAGGTCCCTCGCGATACGGTGCCAACGCGCATCTCCACATACGAGCAACTCATCCAGAAGTCCAAGTCGATGCCCGATTTGGGAGATAGCGAGGTCCCGTCTGGCGCAACCACGCCCGGCGGGTCATCGTCCCGCGCCAGTAGTAGCGGGGGAGGAGGCGGCGGGGGCAGGGAGACACCCGTGTACCCCAAACGGCGTTTCTCCATTGAGTCTCTGCTAGAGGAGGACATTAACAATGGGAACGGGACGTCCCATCACGCTCACCAGGGGGCGAGGAGCCCGCCCGAGGGTCAACCCCGCCTCGCCCTGGACCCCCACAATTTCCCCGACCCCCTCGTATATCGACGGGCCGCTGTCCCGGGGGCCGAGTACTCTGAGTCGGAGCAGGATGCAGCCGCCTCGGACCTCAGTGACTTTGTCCAAGTCGAAGGATCCTCCTTCTGCAGCGAGAGCGACTTCGACCACTGCTCGCTCACCTCGTCGGTCGAGAGCTTCTACGGCCCCTCCTCccgccacagccacagccaccaCAACCCTAGTCATCAATCTCTCGGTCAGGGTCAGGGCTACCAGCACCGTCACCTCATCAGCTCGTGTAAAGGACACTGCCCGGCCTCCAACACCCGCTTCACCACCATGCTGCGCCACGAGCGGGAGAGGGCCCGCCAGGAGCTCCGGCAGAAACCCCCCCAGACACAGCAAACCAGACacgggggaaggggagggagcgGAGGGGACCACCATGCTCTACCCCCCTCGTCCCAAGCAGCCCAAACCCAGCAGGGGATGTCCAAGCTGGCCTTCCTCGTCAGTCCTGTGCCTTTCCGGAGGAAAAAGGGTGATTCTCCACCCACTTCGAGAAGGAGTAGTGGAGGTCGAAGTACCAGGCCCAAGTCTAAAGAAGCCGTCTATGAAGCTTTGGATGCGGCCTTGAGGGATATCTACGAACACATCCAAGCGGAGCGAGGCCGGAGCGGCGCTAGGCAACCAGACGATAGCATCCTCCGGAGGCTACTGGCTGAGATCCTCCCGGATGTGCCCGAGAGGAGCTCCTCGTTACGGGGGCAGAGGGGGAGCCGCAAGGGGGGTCCCTCCTCGGGCTCCTTGTACCCCGACGGGAGTCCAGCGGTGTACGGCTCGTCGCCGCGGCTACAGTCGCCGCTAAGTGCCTGTTACAGTCGTCATACCGACGCCTCCAATAATGACAACTATGGAGAGGAGCCAGGCAACGGCAATGCAGAGCAGGATGCCTCCAGGGGGTACAGCACAACCACCAGCGACGGGGGAGGGGGGCAGACCAGACGAGCCACCCCGGACAGAGAGGTCTCCCATAAGCAGATGACCCAActcattctcttctctctcctccatcagaaACAGCCTGCCAGAGCTATATATGACTTTAAGGCACAGACCACTAAAGAGCTGACGTTCAAGAAGGGCGACGCGGTCAACATCATCAGACAGATCGACAGCAACTGGTACGAGGGAGAGCACCGCGGACGACTGGGCATCTTCCCCATCTCCTACATAGAGaagatgCTGTTGCCAGAGAAACAGCAGCCAATTAGGCCTCCTCCACCAGCACACGTCAAAAAGATCGGGGAGGGGGTGGCCCGTTACAACTTCAACGCTGACACTAACGTGGAACTGTCGCTCCGCAAgGGTGAGCGGGTAGTCTTGCTGAGACAGGTGGACCAGAACTGGTACGAGGGGAAGATTCCAGACACCAACAAGCAGGGCATCTTCCCCGTGGCCTACATAGACATCGTCAAACGCTCGCCATCCAAGAGCCCTGCCCCCTCCCACCACCCAGACCCACACGGCTACCCCAGCAACAGGACACCGGGCTCCACGCCCGCCAAGCCATTCGACAGCTCTCCCACCCCCCCTTACCTCCATCACCACCATCCTCCTCGCTCCacgcccccctccccccacacccctCCTCCTGTGAAGACCCGCCGTCTGCAGGCCGCCCCCGGCGAGTGGCTCGTCCTCGGCTCCCCCTCCTCCGATAGCCCCGTATCACCCACGCCGTACCCCATCCCCACGAGCCTCCTCCCTTTCCTGGAAGCTCAAGAACGGAGGGCCACCCCTCCCGCACCGCCCAAACGAGGGCTCACCCCTCCGCCCCGAAACGCATCCAGTCGTCTCGCTGCCTCCATCCCGGCTGTCAAGCAGTGGCTGTTTGACTTAGACTCCCCCCCCTCAGTCCCTCCGTTCTCTCCGCCCCCTCCTCCTgacttctcctctccctcccccgtgCTCGACTCCTTCCTGGGATACCTCGAAGACAGGGGCCTAAGAGACAGTGAACAGAACGAACCACTGTCCCTAGCAGGCAGAGGGGGATTCTTCTGCGCTGAACCCGAGCCGGCGGACACTCCCGCAGATTTGTTGCCATGGTACAGGCCAAGTGCTCAGCCAGTATCCCTAGAACTAGAAACAGAACCCCTGTCTCTTCAGCAGCAAGTGGAAGATCCCTATGATCAGTTGTTGTCTATGATCCTGGATCAGCCCATGTATGACAAAGACGGGGGGGAGGTTCTCAGGCCGGCCGTGGAACCCCCGCACGTGGCACTGACCAACGAATCACAGAGCAGGGTTAGCCTCGAGACGGAGTTTCATAGGCCCGTGACTGCACAGCCCATGTCCATCACGCAGGACAGCCAATCAAAAAGGGTGAATAGGAGGACGGCGGGTTCTCAGAGGCCGATGACGTTGTAcattgaggaagaggaggaagctataggaggggaagaagaagaggaggaggaagaagaaaggaACATTGATGTAGACTGTGGTACTATTACTGTCCACAGAGAGGGACTGAAAACAGAGGCTGATGCCCGCTGTCACAGCACTTTGTGCAACCCGGCACAGTTAGAGCccatcaccctcctccctccccccgtctctcctccctcctcaccatccCCCGCTTTTTACTCTGCCTCACAACCAGCTGAAGCCCTGGctatctcttcttcctctcctacaCTGTCccgtctttctccccctccccgaatccccctctcctccacgcCACAGATTGTGCCACCCTGCTCTCCTCCCCCcacttccctcatctctcccgctcacctctcctctccttcaccctcctctccacttctcaccTCTCCGCCTCCCACCACCTCACCCCTCCCTACCTCCCGCccatcctctactcctcctccccccactTCTCACACCCCTCTCGCTTCCTCCCTTTTGGCCTCACATCAACCCATCCCACCCCTGGTCTCCCCTGctcccccccatccctctcctccgACCTCCCCCATCCCTGATACACAACATGcgctccctttctcctcttctcctcctcctcctcctcctctctcttcctctccttctccctcccctccactcgtCCCCTTTCCAGAGCCCAGGTCCCCTAAGATCAAGCCTCCCTTTAAGCACGACCTCCTCGCGGTCGACGGTAAACCCCCCCGTAGCCCTGTCGCGACCCGAAGGTCCTGTCTGTCGCCTGTTAGAGGTCGAAGGaGGTTTGTGCAGGATTCGCTCCATGGTGGAGGAGACCTGTTCCAGGCCCTGTACAACTATCTGCCCCGTAACGAGGACGAGCTGGAGCTGAAGGAGGGGGACATCGTGGATGTCATGGAGAAGTGCGACGACGGCTGGTTTGTCGGGACTTCCCGACGGAGCAAGCAGTTTGGAACCTTTCCAGGAAACTACGTCAAGAAACTGTAATGATGAATCCGGTCCACCCCCGCACCCTCCTTACTTGGACCCTTCCATCTCTAGCACAACCCATATTGGACACAACCAACCCGGAGTAAAGTTGCCCCCAGACACTGATTTTGGTCAGTTTTGCACTTTCCCCACCAATGGTTAATTTAAGGTTAAGATTGGGGGAGGTGGAGCTGACCCTAGGATGACCTCACTACGACAGGTCATCCAAGAAGCCTTGCTCAAGCATGTGCGACAAcgtcacaaaaaaatattttgttttagCTCTAACTAGCCAACTCTAAAGGAGACTATTCCACTAATTAAACAATTATTTTCTAAAGGATCGAGAAGCTGTAGAAGAAGATCCATACTTTTGAATTCCTTTCACCTCAGATACTGAAGGAAGGGTAGCCAAACAAGATGGCCACCTTTAAATGTTGACATCtgcttttatttgatttattagaTATATTTTAACCCAGTAATGTAATAACTTGCATTGATAAGTTGATTGTGTAACATTCAGAAAGGTCAAATATGGTAAAGATAGAGTTAGAGATGCCAAGTAAACTGCCACTCAGGATTGCCTTGACTTCAACATGTCAGCCATCTTGGTTTTGgacatgtttttttcccctttttcctcAGTGTTAAATCAATAGAGAACCCCCCCATAAATGTAATACACCAACACAGGAACACTCACCTATTTCTCTAGTGAAAATGATGATGCATGATACCCGAAAGTGTTGCTGGATACCACGGGATAGGGTAAGATGTGTTTGGAGGCAAATGCATTGCACCGGAAGGCTCTAGATATCTGCCCTCTATGGGCCTACAGTCAATTCCAGTTTCTCATTTTATAGTGTTTGCAAACTCTTATATGGGCGAGTTATTTCAAATGTGGAATCGTcgatattttattttttagccCTTCTGTTTGAACAATTACAGTACATTTTGTACTTTAGATgggaaataatatttatagatttGGGATTTTATTGATCGATGGATTTGGCGATTTATCCTTATTCTCACTTGAAATGAATGAGTAAACTACGGATTTTACACGTGACAGCTAGATTGGATTGTCGATAGGGCTTTAGGAGTTTGATACCGTTGGAAAAACATATGCAAAAGCAACCCGTTTCCCCACTTTTCTTGTATGTGAAGATATTTATAGTGGGAAAAGTATTGAATATTGATAGGACGTCATTTAGATGTCTCCGTCCATAAATATAACTTTGGATAGAGCAACATAAGTTTCTCAGCTTACTTTGTGTACTTTCTTCTAGTTGAAGTGGCCTAAGGTAAAGTGTGCTTTTGGCTCATTTCAACCACAGCAAAATCCCCTTGCCATGTTTAAGATAACGAGACAATAGCCTACATTTGTTCCCAGTCAAGTCTGACATTTACTTTTGTCAATATACAACAAACCTTCAGGTGTCAATAACACAAGCCTCCTTTTTGAAATTGTGTTATTTTATTCTATGACGAGGTTTTCTTTAAGATCGCTGTTGAATACTGTATTAGGAATGACTTAGCTAATGTTGTCGCCACATTCATTGCCTTTGTCCAAATTGTATGTTTTACTTCACTCTAAATGAATATAATCAGATAAGCGGCGTAATTTGAATTATATAGTTATCTTCCTGGCGTTGTTTTTTTTCTCTAGATCATTCTGACGGCGACCTTTTTACTGTCCGGAATGAATGAAACGATTAGTGTCAATGCAATAGCTTGTTACAATGTATTTGAATAACATTTGTTAGGCATACTTTTTGTGTTCAATGAATGTGATTTTAAGAATTTATTTGGCCTTTTTTTCCCGTGTGTAAATGAGTATGTATTCACATAGGAAGGACACTGGCCGCAGAACAATTGTTTAAGCACCTTAATATGTAATTACTTTATTTTTGGTTTCTGTCTTTGGTTGCTTTTGTTCTCGTTTATTTTTCTCACCATCCCCTTTTCATTCACCCTtccctgggtcgtgttcattagggacCAAACAGAAGAAAGCTGACTACCTGGACATGTCAAATAAGAAATGCAAATGTTCGTGTTCTGTTGCAAACGTTTCCCGTTGCTATCCCTAATGAACACTACCCTGGCATGTGAGAGCACTGCGTGTCTGTtggtgctgttttttttttttgtacgtCTTTTGTATGCAGCTGTAAATCGATGACATGATCCACTGCTTTATAAACTCTTATTTTCTCACCCACCATCCGTTTGGGTTgccttttctcttttctctcacaTTTTCACACCACCTTTTCCTACATCCACCTCAATCGCCCCAAACAGCCATACagtatgcaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1829288 lncRNA downstream 649 18006804 ~ 18007008 (-) True G1597538
TU1829197 lncRNA downstream 138190 17858275 ~ 17869467 (-) True G1597450
TU1829170 lncRNA downstream 180584 17824231 ~ 17827073 (-) True G1597426
TU1829151 lncRNA downstream 208455 17798971 ~ 17799202 (-) True G1597408
TU1829134 lncRNA downstream 216149 17779179 ~ 17791508 (-) True zdhhc5a
TU1829382 lncRNA upstream 23318 18117845 ~ 18118182 (-) True G1597610
TU1829401 lncRNA upstream 41127 18135654 ~ 18135888 (-) True G1597629
TU1829404 lncRNA upstream 43172 18137699 ~ 18137917 (-) True G1597632
TU1829411 lncRNA upstream 50120 18144647 ~ 18144964 (-) True G1597639
TU1829419 lncRNA upstream 58246 18152773 ~ 18153239 (-) True G1597647
XM_021573562.2 mRNA downstream 1907 17980056 ~ 18005750 (-) True LOC110497455
XM_021575222.2 mRNA downstream 30936 17971731 ~ 17976721 (-) True LOC110498559
XM_021573558.2 mRNA downstream 86949 17912928 ~ 17920708 (-) True LOC110497452
XM_021573559.2 mRNA downstream 86956 17912923 ~ 17920701 (-) False LOC110497452
XM_021573557.2 mRNA downstream 104173 17892641 ~ 17903484 (-) True LOC110497451
XR_005037600.1 mRNA upstream 51631 18146158 ~ 18149719 (-) True LOC118941355
XM_036954380.1 mRNA upstream 380869 18475396 ~ 18577887 (-) False LOC110497459
XM_036954382.1 mRNA upstream 380869 18475396 ~ 18577887 (-) False LOC110497459
XM_036954384.1 mRNA upstream 380869 18475396 ~ 18577887 (-) False LOC110497459
XM_036954385.1 mRNA upstream 380869 18475396 ~ 18577887 (-) False LOC110497459
TU1828776 other downstream 384181 17615962 ~ 17623476 (-) False LOC110497446
TU1828650 other downstream 508214 17494669 ~ 17499443 (-) False G1596970
TU1828651 other downstream 508214 17494669 ~ 17499443 (-) False G1596970
TU1828656 other downstream 508214 17494669 ~ 17499443 (-) False G1596970
TU1828610 other downstream 569779 17437664 ~ 17437878 (-) True G1596940
TU1830226 other upstream 669188 18763715 ~ 18764422 (-) True G1598418
TU1830958 other upstream 1114765 19209292 ~ 19209964 (-) True G1599097
TU1831082 other upstream 1277782 19372309 ~ 19381751 (-) True G1599197
TU1831662 other upstream 1461070 19555597 ~ 19557357 (-) True G1599717
TU1831722 other upstream 1541491 19636018 ~ 19637027 (-) False G1599760

Expression Profile