RNA id: XR_005037600.1



Basic Information


Item Value
RNA id XR_005037600.1
length 634
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118941355
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 18146158 ~ 18149719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gccatgtctgtaggCCTCTCTGTTTCACGCTCTCTTTATGTATTGAGCTATcgtttgtttgagcacctccatagcactttgtcatcaTCTGTTACCACAGGGACTGGAGAGCCCGGCGgggccagagcgagagagaggtgtattctgtgagacagggatgaagcGATCACTGgtgTTTGATCCAGATGCCATTCTCGGGGGCGAAGGATGAAGCTCCCTTAGTGGACTGAGGTCTTCCCGCTTCTGACACAACCTCCACGTTGAAGTAGCGCAAGATGGATGCCAGGATCACCTTCTCCATCACGGCAAAGCTCTGACCTGGGGGCACGGGTGTAACAAGAGCATGTGAGGATACACACTTTTAATCCTCCATTTTGTTTTAATTATGTCTTGTTTTTTGTTGTCTGAAGTTAAACTTTAGTTTGTCACTATCATTAAGGTAGTGATAGCTTGTAAGCATCTTCGTTGGACAGGCCCACTGTAGTGGACAGTCCACTATCAAGCTGATAAAACATTGATCAATACCTGTGACATTGTACAACCCAATccttgttttatttttaaaatctttTATTTTGGCTTCAAATTGAAAATTGCCGCCAAAGGTGACCAATCTTGTGTCATTAATCTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1829411 lncRNA downstream 1194 18144647 ~ 18144964 (-) True G1597639
TU1829404 lncRNA downstream 8241 18137699 ~ 18137917 (-) True G1597632
TU1829401 lncRNA downstream 10270 18135654 ~ 18135888 (-) True G1597629
TU1829382 lncRNA downstream 27976 18117845 ~ 18118182 (-) True G1597610
TU1829288 lncRNA downstream 139150 18006804 ~ 18007008 (-) True G1597538
TU1829419 lncRNA upstream 3054 18152773 ~ 18153239 (-) True G1597647
TU1829422 lncRNA upstream 4772 18154491 ~ 18154721 (-) True G1597650
TU1829618 lncRNA upstream 157801 18307520 ~ 18307757 (-) True G1597833
TU1829627 lncRNA upstream 165279 18314998 ~ 18315213 (-) True G1597842
TU1829882 lncRNA upstream 252498 18402217 ~ 18408359 (-) True G1598084
XM_036954377.1 mRNA downstream 51629 18007657 ~ 18094529 (-) False LOC110497456
XM_036954378.1 mRNA downstream 51629 18007657 ~ 18094529 (-) True LOC110497456
XM_036954379.1 mRNA downstream 51631 18007657 ~ 18094527 (-) False LOC110497456
XM_021573562.2 mRNA downstream 140408 17980056 ~ 18005750 (-) True LOC110497455
XM_021575222.2 mRNA downstream 169437 17971731 ~ 17976721 (-) True LOC110498559
XM_036954380.1 mRNA upstream 325677 18475396 ~ 18577887 (-) False LOC110497459
XM_036954382.1 mRNA upstream 325677 18475396 ~ 18577887 (-) False LOC110497459
XM_036954384.1 mRNA upstream 325677 18475396 ~ 18577887 (-) False LOC110497459
XM_036954385.1 mRNA upstream 325677 18475396 ~ 18577887 (-) False LOC110497459
XM_036954386.1 mRNA upstream 325677 18475396 ~ 18577887 (-) False LOC110497459
TU1828776 other downstream 522682 17615962 ~ 17623476 (-) False LOC110497446
TU1828650 other downstream 646715 17494669 ~ 17499443 (-) False G1596970
TU1828651 other downstream 646715 17494669 ~ 17499443 (-) False G1596970
TU1828656 other downstream 646715 17494669 ~ 17499443 (-) False G1596970
TU1828610 other downstream 708280 17437664 ~ 17437878 (-) True G1596940
TU1830226 other upstream 613996 18763715 ~ 18764422 (-) True G1598418
TU1830958 other upstream 1059573 19209292 ~ 19209964 (-) True G1599097
TU1831082 other upstream 1222590 19372309 ~ 19381751 (-) True G1599197
TU1831662 other upstream 1405878 19555597 ~ 19557357 (-) True G1599717
TU1831722 other upstream 1486299 19636018 ~ 19637027 (-) False G1599760

Expression Profile