RNA id: XM_036954416.1



Basic Information


Item Value
RNA id XM_036954416.1
length 5550
RNA type mRNA
GC content 0.54
exon number 9
gene id LOC110497531
representative False

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19626854 ~ 19642015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGAGCCAGTCGAGAGAGCCGGAGAGCGAGAAACTGACGGAGAAGACTAGTCGGTTTTTAACATGGCGGAGACCGTACGCTCGCTCTTCGACTACCGTGAGCCACCGACCCTGGACAGCGACGGAGAGGGAACCAAACCGGCGCCAACACCTCGGGGaCGCGGTTGTGGGAGGAAAAGGAAGGGAACGCCGGTGAAAGTGTGCGACCGCGTCTTTGTaacagaggatgaggaggagagctCCGAACACAGCTACggtccagGTAATGGTAAAGGGGCTGCAGAGAACAAACGACCAACCCTGGATGGCCCATGCTACATCAATGACCCTGTTCAGATCTGCAGTGGGTCTTCAGAGTTGGGTGAGGAGGGATCCAGCGGGGGCAGGGGGGCGGCAGTGATGTACCCCCCTCCTCCAAACTGCCGCATCCGAGAGGTACACTGTGGGAGCCAGGTGCGTCTGGTCGTCATAGCGATCCGAGACATCACCAAGGGAGAGGAGATCACCGTTGACTACAGCCTGACCGAGTGGGGAGACAACACTATGGGTTTCCGTGGTACTGTCTCCTCAGGGAGATATGAGTGTATCGCTGACCCTGAGAACAACCGTATCAAAAAGgagGAAGAATCCGGGCTcgtgccctcctctctctcagcccagGACTACCTCACCCCTTCCTGGCCCctgtccccctcttcctcccccctctcccactccaacGCCAGCGACTCGGATCCCCAGAATGAGGAGGGCGAGGACGGGGGTCAGAGACGCACACCTCGCCGCCGAAAACGCCGCCGGACCACCACACCTTCCAAAAAGAGAACCACCCCTCACCGGACATCCCCGGGccgccctcccctctcctcttcataccgccccctcaccttctccccccctccctcctcctccacctcttctcgcCCTTCTCTGTTCAAATCCCCCGCTCCGTTGGGGCCCAACACGACGGCGAACATCAGTATTAACATCGCCAGGGGGGTTGGCATGGGCGTGCCCCCCCAGAAGCTGAGCTGCGCCTACTGCGGCCGCCACTTCCGCTCACTGGGGCGCCACCTGGACAAGCACCACACCAACCAGCCTGAGATCCGCGCCGCGCTCATCGAGCGCTTTATGCCCCACCTGGCGGCCGCGCACGCCACACACCACACTCAGTCCCAGCAGCAACCTCGGTCATCATCAGGAGTGGAGCAAAACTCCCACAAGCCACCACCGGGGGGCGCCACCGCGTTCTCCCTGTCTCCTCAACGTCCGGCCGCCCAATCCCCTTCCTCCGCCGTTGGGGGAAACTCCTCCCCCCTGGTATTGACTCCACCCCGAGGGCGCAGTGCGGTGGCCGTGTCCGTTCTGAAGAGAAGCCCGCCTCCGGCGGCTGTGAACCCGCCCAGAAAGGCGGGACTGCGCAAAGTGAAGAaggaaaaagaggaggaggaagaggagaacgaTCTGGTGGAAGTTGAGGTGGTGAAGCCCAAAGAAGAGGCAGAGGCGGCTTTTCCCCACGTCTTTCAGCAGACGCCCAAGGAGATGGAACGGCTGCCGAAAGAGCATGaaaatgaagaagaggaggaggcgaACGGTATGATGGAAGACGACAGTGGAGCGGAGGATAAGGAGAAGGAGTTATTGAGttCGGGACGTCTCCACATgctgcccctcctctcctccctgtcttccCTGGTCCTCTACCTCCGCAGGCTCCAGCACTCTGCCTTCCTCTCCCTGTCCCGCCAGCTCCAATCCGCCGAGGCCTGGCGCCTCCTGTGCCACTCCTCCCTCGCCCTGCTCATACTCTACAATCGTCGCCGCGAGTGCGAGGTCTCCAAACTGGCCATAGCCGAATACCGCTCCCGTGTCACCCCCCAGTGCCCCGTGCCAGTGCCCCCCGGCGCCCCGCCCGCCCTCACACCCCTGGAGGCATCGCTTTCGCCCTTTGAGCGTCTCGTGCTTCCACATTTGCCTCGAGTAGGTGTCCAGGGCAAACGAGGAAGAGTCCAACCTCTTATCCTGCCACCGCACTGCGAGCCGTGTCTGGAACTCCTCCTCCAGACCAGGCAAGATGTCGGCGTCGATCCCCAGAACCCGTACGTCTTCGCCCGGCCGTACCACTCCCCAGCCACCCCCCTCCGTGGCACCGACCTCCTCCGGAGCCTGGCCCGCTCCAGTGGCACCCGGAACCCCCGCGCCCTCACCCAGACCCGAGTCCGGCGCCAGGTCGCCATCTTGACGCAGCTGCTATTGCTCGGCGAGGGGGAGGAGCCAGGACAGCCGGGTGGGAACGCCGTAGAGCGCCTGGAACACTTCCTGGAGCGTGAGTACCACGTGACGCAGAGCTGCGGCGGGATTGGCCACGACCCGGGGCTGATGGGTAGAGTGGGGCGCGTGGTGCTGTGCGGGGAGAGAGACGGCGTGCTGTTCCGGGGGATGAGCCTCCACCACATCTGTCTGGAGCTTGACGTGATGTCAGGCAACTCGGCCGACTCGTACTCGGAGGGCGACTCTGACGGCGAGGGGCGGAAGGAGAAGGGCGAGGTGGCCTCTCCCAGCCTGCTGATGGTGAGGAAGGGCAGGACAAACAGCAGGACGCCGCGTGCCAGGAAACTCAAGGTCACGCCCTCCTCCACATCgcccctctccccctcgctccccGGCCGCAGAAGAGGCTCAGGTGGGCCCaaatcagGAAAACGCGGCGTCCTCAAGCGCCCGTGGTCGGACGCAGAGCGCGCCGCTGTGGAGGAGCACCTGACCTGCAACATCGCTGAGCTGCGCGTGCCTGCTAAGGCCGACTGCGAGCGCTGCCTGCAGAGCTGCCCGCTGCTGGTCACCAACCGGCGCGACTGGCGGGCCATCAAATTCTACTGTCACAACCGCATCCAGCTGCTTAAGAAGAACCAGCGGCGTGAGGACGACGGGACGCCCATCATGGTGTGCTGAGAAGACTGGCGGAGAGACTGAGagatagatggacagacacaacAATAGCTCCACAGTATCCACAATAGCGTGCTACTTGGAATGAAGGAAGCCAAAACAGAGGCGTGGTCAACTCCGTAACGTTACTGCAGTGACTGTCAACTCTGTAATATTTTTTCCGCTGACGGTCCAAAAACAAGAGTTGATGCTTAAGGAACAGAGTTGACGCTTAAGGAAGCAATGTAGTGGGCGTGTCTTTGAAGTGGTACGCTAATGTGGGTATTGGAATGTAGCCTACATCTCATTaagcaggtttccatccaacctttttatgtagTAAAGTACGGGTCAATGTCGGGTCAAAAATGTagtgacaggcctgatggaaacaacATTTTTCGGTACACTTTCCAAATGTCAACAAAACgaaatacgctagacaaggtgggatattttgtgtcggtaaaatgaaGTATGCGAGAAATGTCGGTGGAACTATTGatgtaataaccatcatatcgaagtaatcTTGGGGTCGCGCGATGACATGTGTGGCCCTCCCACTACGGCGCgtcaggaaagcatgcagtttattaggctacagattaaatacattgggatgaacttcacagggtggtgaaagtgcaaggtgatgagcttgatgctcctgtttaataaatatcaagggtcttattTTGGTGATCATCGATGCGTGGcagccgtttgacaaataaagaAAACTCGCTCTTTTGGccataataatctcatgtagCCTATACGTGTGTTCTAGCCAACAGTGCGCACGTGCCAGTACCAGAGTGGGCAGACTCGCTATATAACAGAACAGTTTTTGTGGGAAAACCCATctgtagagttgaaaatgtgatggaaacccatttaacttattttttttatttggtacatgggaatttaacagcAAAAGGTATTTGTATGTGCACTACATCATCACGCacagtcaatttgatggaaacgtgtctctggtgggaaaatgcacagATTGTTTTTGTGCGGATTTGAGAatatctgtcaccaattggatggaaacctagctattgatACACTTATATATTGTCCTCTGAGACAAAAAGAGGTAGAGACTgggggagtgagagaaggagtgACTGTGTAGGAGTGACAACAGCCTGTGTTGTGTATGTGGACATTTTAATTTAGTTTTCGCTTGAAAACGAGATGAACAATGTTCAGTACAACAGATTGttgtatttagattttttttggacTCCGGTGTTTTTGACATACTCAAGTGTTGTATGGACGTTTCTGAACACACTCAAGTTAACACTATTAGGGTTTGaggctgtagtgtgtgtgtgtgtttccagtgcTGAGAAGATGTTATAGGGTCTCCAACACCCAGTCCTGGAGAGTGCATGCTTTAGTTCCAGTACTAACTCACCCGATGAAACTACACCTGACTGAAAGACCATGGCTAGATCATTATTTAAAACGGGTGTGTTAATAGCGCTGAGCCGCAGCAAAAGCCTGCACCCCAGGAGCGGAGCAAGAGAGCCCCTGGGTTAGAGTGAAGGGGGGGTGAAGGAAACGCCACCATCAGTGTGTTGTAAATTTTCTTTTTGGACTACCTAAGACACTGTATAGTCAGTTTGGGGCTTTTCCCCGCTCCCTCCTTCAAAATGAACACTACAAGACAGCAATTGAATACTGCTTTGCCTAAAATACACCAAGTATATTCTTGTTGTTGACATCTTTCTTTTATTTTGTGCCTGTTGCACGTGTTTTCTTAAAAGCGCTTTGAAAAGGTGCATTAGGCCGTCGGGCCATTCTTCTGCGACGAGCAGAGTTCTGTATTTAACTTGGCTGTGTTCTTCAAAGTGATTTTTGGGGGGGCAATCTTTCAGAAGAGTGGGCATAGCTGAATACTATGCCACGCTATGGTTATTTTTTTACATGCAGTGTTGTTGCGTCATTTGTGTTGATTGTTTTGCCTTTTCAGACTGACCAGTGTAGCTCCAGTCTTTTTTCAGCAACTCTGGTTTCTATCGTTCACTGCTGTTAGATGAGCTGCTTGTAGCTCTAGTCCAGGGTGTTAGTGTGGCTTGCTAACTCTTAGGCTGGCATTCAATCCGATCAGTGGTAGATTTGCATTATAGCACGCTTGACATTTTTTAAAGTAATTTCCGATTAAGCCGACATATACAGAGTTTGcggaaacattgcctttaaaaggtgcataGCTGACAAAGTGCGGTCGGGTGGAATCCCGGCTTGAGCCTTCACAGCTTTAGCTAGTCGCActaacgccctggaccagagctaggctTCTTTGTAGGTCTGCCGGAGCCCCAAGTAACCCGGCATTTTGTCTTATTGGATTAAAACCGCACAACACCTCTTGATAGATAGTTGAATTTATTTAACATAATCACATATAATCTTACATTGTTTCATGCTATCATCTTGCCAGTTTCGgtgtacataaaaaaatatgatCATTACGTAAACTGGTTTGTTTGTGCTGTCCGTAGTTTATTTGTTCATTTGCGAGTTGGTATTGTACATAGGTCTATGGTTTTGTAAatattcacagaaatgcataaaggGGAAAAAAACTACA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1831197 lncRNA upstream 6826 19619048 ~ 19620028 (+) True LOC110497532
TU1831215 lncRNA upstream 11420 19615197 ~ 19615434 (+) True G1599314
TU1831211 lncRNA upstream 15079 19611501 ~ 19611775 (+) True G1599310
TU1831206 lncRNA upstream 18978 19607578 ~ 19607876 (+) True G1599305
TU1831135 lncRNA upstream 31351 19594384 ~ 19595503 (+) True G1599247
TU1831229 lncRNA downstream 21870 19663885 ~ 19664131 (+) True G1599328
TU1831327 lncRNA downstream 172032 19814047 ~ 19820053 (+) True LOC110498681
TU1831321 lncRNA downstream 199425 19841440 ~ 19843530 (+) False G1599414
TU1831322 lncRNA downstream 199425 19841440 ~ 19843530 (+) False G1599414
TU1831323 lncRNA downstream 199425 19841440 ~ 19843530 (+) False G1599414
XM_036954415.1 mRNA upstream 7478 19603748 ~ 19619376 (+) False LOC110497532
XM_021573677.2 mRNA upstream 35412 19585072 ~ 19591442 (+) True LOC110497534
XR_005037677.1 mRNA upstream 268404 19347903 ~ 19358450 (+) False LOC110497473
XM_021573594.2 mRNA upstream 298505 19326377 ~ 19328349 (+) False LOC110497472
XM_021573595.2 mRNA upstream 298505 19326377 ~ 19328349 (+) False LOC110497472
XM_036954418.1 mRNA downstream 59802 19701817 ~ 19702322 (+) True LOC118941465
XM_036954417.1 mRNA downstream 60688 19702703 ~ 19707315 (+) True LOC110498684
XM_021573671.2 mRNA downstream 80958 19722973 ~ 19729929 (+) False LOC110497530
NM_001124379.1 mRNA downstream 103445 19745460 ~ 19751328 (+) True serping1
XM_021575323.2 mRNA downstream 172485 19814500 ~ 19840884 (+) False LOC110498681
TU1831070 other upstream 208337 19392291 ~ 19418517 (+) True G1599186
TU1830797 other upstream 293404 19333020 ~ 19333450 (+) True G1598961
TU1830796 other upstream 294634 19331741 ~ 19332220 (+) True G1598960
TU1830735 other upstream 298525 19326428 ~ 19328329 (+) True LOC110497472
TU1830606 other upstream 593678 19032885 ~ 19033176 (+) True G1598786
TU1831264 other downstream 81040 19723055 ~ 19729926 (+) True LOC110497530
TU1831349 other downstream 205867 19847882 ~ 19848518 (+) True G1599434
TU1831365 other downstream 224175 19866190 ~ 19871068 (+) True LOC110497526
TU1831385 other downstream 402577 20044592 ~ 20046762 (+) True LOC110497521
TU1832168 other downstream 768658 20410673 ~ 20410899 (+) True G1600166

Expression Profile


XM_036954416.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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XM_036954416.1 Expression in each Bioproject

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XM_036954416.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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