RNA id: XM_021573642.2


Basic Information

Item Value
RNA id XM_021573642.2
length 1523
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110497506
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22122397 ~ 22169711 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTGTACTACCGCGGGAAACTCATTGCTTGCACTGTATCACTGAAGCCGGAGAAACTCAGTCCGTGAAAGTTATTTACATTGCAAAATGTCCAAAAAAAAAGGTCTCAGTCTTGAGGAGAAGAGGACTCGCATGATGGAGATTTTCTTCGAGACAAAAGAAGTGTTTCAGCTGAAGGACATAGAGAAAATCGCCCCCAAGACTAAAGGAATAACACCCATGTCAGTGAAGGAGGTTCTCCAGAGTCTGGTGGATGACAATATGGTGGACTGTGAGAGAGTGGGCACCTCAAACTACTATTGGGCCTTCCCCAGCAAGGCCCTGCATGCCCGCAAGCGCAGGTTGGAGGAGCTGGACAAGCAGCATACCGTGGAGAAACAAAGGAAGATGTCTCTGCAGCAGGCTGTCGACAAATCAAAAGTAGGACGTGAAGAAACCGAGGAGCGGGCCACTCTTCTAAAGGAACTGCAGGCtctgagggagaagaggagtcATCTGAAGGCAAAGCTGGAGAAGTACAGGGAGTGTGACCCGGAAGTGATCGAGGAGATGAGAAAGTCCAATGTCACAGCTAAAGAGGCAGTGTCCAGATGGACAGATAACGTCTTTGCCATCAAGTCGTGGGCCAAGAGGAAGTTTGGTTTCGATGATGGACGCATCGATAAAGCCTTCGGGATACCTGAAGACTTCGATTACATGGACTGACTGCATGATCTGTAATTTCTATTAATTGTTTTTGTTAATTGAGTGACAGCCATTGCACACATTGCAATGCAAGTCAGACATGTTACTTAAATCCACTCAGGCAAGCCCCTCAAAAAAAACAGCCTTGTGCTTTTCGTAGTTGACTTGGAGCAGCTGCCATTTTGACGCTCGCTCATGGCCCTCGCAGGTGCAAATGCTGCTTCTGTGGCACTTGAGAAGGCGCTGTGCTAACCTTTTGGCCACCTTTTTGCATGAAAATCAAGAGCCCAGAGTCGTTGACGGAAATTTGTTTTGTCCAgcacccccccaccacacacagaaaAAGAAGCGGCACATCGAACTCCCATCGATGTTAAAAATCTGATCTTACCTGATTTAAACGGATGGAAATTAAAACAGTCATTTCCATCAAAAACTCATGTTGTTTttgctctccccatctctctttttgTAGTTTACTTTGACAAAATAAGCATCTGCCACTGTGGCACCAGGACTGACTGGATTTTCCTTATCTCCTGTTTTAAATCAAAAGAGGGAGAGGGTCATTGTGGACATAACGTGCTTGGTGATTGACAATGCAGTGGAAAGCAAGGAGCACCGAAACACAAATAGGAGTGCCACTGAAATATCGTTGAGGAGGCTTTACAGTGGAGATATGTTTAGAATTCACCATTTAGAAGAGCCATAAATTATAATTCCCTGTAAATGTGCTTTATAGTTTTGTGGCTCTGTAGACTCGACAGGATTTCAGGTTTTGTTGTTGAAAACATGATGGATGATTTGTTTGAATGGAGAGGTGAATGAACAGTAACATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1834707 lncRNA downstream 115778 22007293 ~ 22007646 (-) True G1602559
TU1834702 lncRNA downstream 118417 22004554 ~ 22005007 (-) True G1602556
TU1834643 lncRNA downstream 191440 21931783 ~ 21931984 (-) True G1602504
TU1834636 lncRNA downstream 198701 21924429 ~ 21924723 (-) True G1602497
TU1834629 lncRNA downstream 208748 21914457 ~ 21914676 (-) True G1602490
TU1834779 lncRNA upstream 11805 22167627 ~ 22169711 (-) True LOC110497506
TU1834847 lncRNA upstream 36104 22191926 ~ 22192138 (-) True G1602655
TU1834817 lncRNA upstream 54730 22210552 ~ 22215865 (-) True G1602626
TU1834848 lncRNA upstream 62409 22218231 ~ 22218839 (-) True G1602656
TU1834863 lncRNA upstream 87810 22243632 ~ 22247511 (-) True G1602671
XM_036954447.1 mRNA downstream 2413 22008323 ~ 22121011 (-) True LOC110497508
XM_036954446.1 mRNA downstream 2416 22008323 ~ 22121008 (-) False LOC110497508
XM_036954444.1 mRNA downstream 2417 22008323 ~ 22121007 (-) False LOC110497508
XM_036954445.1 mRNA downstream 2417 22008323 ~ 22121007 (-) False LOC110497508
XM_036954448.1 mRNA downstream 2750 22008323 ~ 22120674 (-) False LOC110497508
LOC110498675 mRNA upstream 58 22155880 ~ 22186787 (-) True LOC110498675
NM_001124244.1 mRNA upstream 66026 22221848 ~ 22225274 (-) True LOC100135859
XM_021573632.2 mRNA upstream 175255 22331077 ~ 22358393 (-) True LOC110497500
XM_021573628.2 mRNA upstream 331890 22487712 ~ 22497823 (-) True LOC110497496
XM_021573627.2 mRNA upstream 366170 22521992 ~ 22566059 (-) False LOC110497495
TU1832025 other downstream 1986863 20127211 ~ 20136561 (-) True G1600030
TU1832008 other downstream 2014633 20107915 ~ 20108791 (-) True G1600014
TU1831718 other downstream 2481421 19638760 ~ 19642003 (-) False G1599758
TU1831722 other downstream 2486397 19636018 ~ 19637027 (-) False G1599760
TU1834958 other upstream 247694 22403516 ~ 22403837 (-) True G1602753
TU1834968 other upstream 259596 22415418 ~ 22416043 (-) True G1602763
TU1836272 other upstream 985994 23141816 ~ 23144544 (-) True LOC110497482
TU1837328 other upstream 1817968 23973790 ~ 23974106 (-) True G1604902
TU1837435 other upstream 2034876 24190698 ~ 24206438 (-) True gpr137c

Expression Profile